ZFIN ID: ZDB-GENE-060503-368
Gene Name: chondroitin sulfate proteoglycan 5b
Gene Symbol: cspg5b    Nomenclature History

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Previous Name: si:dkeyp-114f9.4

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 19 Mapping Details/Browsers
Description: Predicted to be involved in cell projection morphogenesis and trans-synaptic signaling, modulating synaptic transmission. Predicted to localize to synapse. Is expressed in granule cell. Orthologous to human CSPG5 (chondroitin sulfate proteoglycan 5).
Genome Resources: Alliance (1),  Gene:559358 (1),  Ensembl(GRCz11):ENSDARG00000099793 (1)
GENE EXPRESSION
All Expression Data: Fig. 3 from Takeuchi et al., 2017
Wild-type Stages, Structures: Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
High Throughput Expression: Expression Atlas (1)
PHENOTYPE No data available
DISEASE ASSOCIATED WITH cspg5b HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH cspg5b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process nervous system development (more)
Cellular Component integral component of membrane (more)
GO Terms (all 6)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
aberrant processed transcript cspg5b-202 (1)    Ensembl 1627
mRNA cspg5b-201 (1)    Ensembl 1907
cspg5b-203 (1)    Ensembl 2485
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM cspg5b No data available
MARKER RELATIONSHIPS
cspg5b Contained in: [BAC] DKEYP-114F9 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001044892 (1) 1814 nt
Genomic GenBank:CR626877 (1) 173824 nt
Select Tool
Polypeptide UniProtKB:A0A0R4IMK4 (1) 540 aa
Sequence Information (all 15)
ORTHOLOGY for cspg5b ( Chr: 19 )
CITATIONS (16)