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ZIRC
ZFIN ID: ZDB-GENE-060503-351
Gene Name: collagen, type XVI, alpha 1
Gene Symbol: col16a1    Nomenclature History

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Previous Name: si:dkey-27a13.1

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 19 Mapping Details/Browsers
Description: Is expressed in dermis. Orthologous to human COL16A1 (collagen type XVI alpha 1 chain).
Genome Resources: Alliance (1),  Ensembl(GRCz11):ENSDARG00000009194 (2)
GENE EXPRESSION
All Expression Data: Fig. T2 from Li et al., 2011
Wild-type Stages, Structures: Larval:Day 6 (144.0h-168.0h) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa8492 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa10058 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa10956 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa12058 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa15494 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16684 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa23577 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa29247 Point Mutation Unknown Splice Site ENU
    sa36890 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa43329 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH col16a1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH col16a1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process extracellular matrix organization (more)
    Cellular Component extracellular matrix (more)
    Molecular Function extracellular matrix structural constituent (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001791 (1)
  • InterPro:IPR008160 (1)
  • InterPro:IPR013320 (1)
  • Pfam:PF01391 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA col16a1-201 (1)    Ensembl 538
    col16a1-202 (1)    Ensembl 5413
    col16a1-203 (1)    Ensembl 313
    ncRNA col16a1-003 (1)    Ensembl 752
    Browsers: EnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM col16a1 No data available
    MARKER RELATIONSHIPS
    col16a1 Contained in: [BAC] DKEY-27A13 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    Genomic GenBank:BX640468 (1) 146186 bp
    Select Tool
    Polypeptide UniProtKB:F1Q593 (1) 1605 aa
    Sequence Information (all 5)
    ORTHOLOGY for col16a1 ( Chr: 19 )
    CITATIONS (14)