ZFIN ID: ZDB-GENE-060302-3
Gene Name: sorting nexin 1a
Gene Symbol: snx1a
Sequence Ontology ID : SO:0000704

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Previous Names: snx1, d254 (1), sb:cb923, wu:fb40c08, wu:fj65g09 (1)

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(Including Attributions)
Location: Chr: 25 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have phosphatidylinositol binding activity; predicted to be involved in early endosome to Golgi transport; predicted to localize to the endosome membrane; orthologous to human SNX1  ...
GENE EXPRESSION
All Expression Data: 6 figures from 2 publications
Directly Submitted Expression Data: 5 figures (8 images) from Thisse et al., 2001 [cb923]
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa11226 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH snx1a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH snx1a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process intracellular protein transport (more)
    Cellular Component retromer complex (more)
    Molecular Function phosphatidylinositol binding (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001683 (1)
  • InterPro:IPR005329 (1)
  • InterPro:IPR015404 (1)
  • InterPro:IPR027267 (1)
  • InterPro:IPR028660 (1)
  • InterPro:IPR034901 (1)
  • InterPro:IPR036871 (1)
  • InterPro:IPR039358 (1)
  • PROSITE:PS50195 (1)
  • Pfam:PF00787 (1)
  • Pfam:PF03700 (1)
  • Pfam:PF09325 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA snx1a-201 (1) 2918
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM snx1a No data available
    MARKER RELATIONSHIPS
    snx1aContained in: [BAC] CH211-11I22 (1) (order this), DKEY-279I2 (1) (order this)
    snx1aEncodes: [EST] cb923 (1) (order this), d254, fb40c08, fj65g09
    [cDNA] MGC:195296 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001128671 (1) 2333bp
    Genomic GenBank:AL929134 (1) 162177bp
    Select Tool
    Polypeptide UniProtKB:B3DKJ3 (1) 662aa
    Sequence Clusters UniGene:76932 (1)
    Sequence Information (all 24)
    OTHER snx1a GENE PAGES
  • Alliance (1)
  • Gene:337386 (1)
  • VEGA:OTTDARG00000036386 (1)
  • Ensembl(GRCz11):ENSDARG00000071031 (2)
  • ORTHOLOGY for snx1a (Chr: 25)
    CITATIONS (23)