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ZIRC
ZFIN ID: ZDB-GENE-051120-129
Gene Name: radial spoke head component 9
Gene Symbol: rsph9    Nomenclature History

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Previous Names: si:ch211-117l16.2, zgc:123211

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 4 Mapping Details/Browsers
Description: Involved in axoneme assembly and cilium movement. Localizes to the axoneme and kinocilium. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 12. Is expressed in forerunner cell group; nervous system; pronephric duct; and spinal cord neural rod. Orthologous to human RSPH9 (radial spoke head component 9).
Genome Resources: Alliance (1),  Gene:558005 (1),  Ensembl(GRCz11):ENSDARG00000017355 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa20196 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • uw208 Small Deletion Exon 2 Frameshift, Premature Stop CRISPR
    uw212 Indel Exon 2 Frameshift, Premature Stop CRISPR
    Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-rsph9 1
    MO1-rsph9 N/A 1
    MO2-rsph9 N/A 1
    MO3-rsph9 N/A 1
    DISEASE ASSOCIATED WITH rsph9 HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    primary ciliary dyskinesia 12 Alliance Ciliary dyskinesia, primary, 12 612650
    DISEASE ASSOCIATED WITH rsph9 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process axoneme assembly (more)
    Cellular Component axoneme (more)
    Molecular Function molecular_function (more)
    GO Terms (all 14)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR006802 (1)
  • Pfam:PF04712 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA rsph9-201 (1)    Ensembl 1138
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Name Type Isotype Host Organism Assay Source Publications
    Ab1-rsph9 polyclonal Rabbit IHC Sigma-Aldrich
    3
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rsph9 No data available
    MARKER RELATIONSHIPS
    rsph9 Contained in: [BAC] CH211-117L16 (1) (order this)
    rsph9 Encodes: [cDNA] MGC:123211 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001030113 (1) 1090 bp
    Genomic GenBank:BX649467 (1) 74769 bp
    Select Tool
    Polypeptide UniProtKB:Q5TYW6 (1) 277 aa
    Sequence Clusters UniGene:31155 (1)
    Sequence Information (all 10)
    ORTHOLOGY for rsph9 ( Chr: 4 )
    CITATIONS (22)