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ZIRC
ZFIN ID: ZDB-GENE-050522-28
Gene Name: BARX homeobox 1
Gene Symbol: barx1    Nomenclature History

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Previous Name: zgc:110654

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 11 Mapping Details/Browsers
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II regulatory region sequence-specific DNA binding activity. Involved in cartilage development; pharyngeal system development; and positive regulation of mesenchymal cell proliferation. Predicted to localize to the nucleus. Is expressed in several structures, including digestive system; mesenchyme; neural crest; pharyngeal arch; and posterior lateral line ganglion. Orthologous to human BARX1 (BARX homeobox 1).
Genome Resources: Alliance (1),  Gene:553644 (1),  Ensembl(GRCz11):ENSDARG00000007407 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
barx1_unrecovered Point Mutation Unknown Unknown ENU
fh330 Point Mutation Unknown Premature Stop ENU
fh331 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la010758Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa10360 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-barx1 N/A 1
    MO2-barx1 N/A 1
    DISEASE ASSOCIATED WITH barx1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH barx1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cartilage development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 12)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA barx1-201 (1)    Ensembl 1430
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM barx1 No data available
    MARKER RELATIONSHIPS
    barx1 Contained in: [BAC] DKEY-189A9 (1) (order this)
    barx1 Encodes: [EST] IMAGE:7164742 (1) (order this)
    [cDNA] MGC:110654 (1) (order this), MGC:162464 (1) (order this), MGC:192281 (1) (order this), MGC:193762 (1) (order this), MGC:193776 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001024949 (1) 1461 bp
    Genomic GenBank:CR548622 (1) 137993 bp
    Select Tool
    Polypeptide UniProtKB:B2GRF3 (1) 248 aa
    Sequence Clusters UniGene:87457 (1)
    Sequence Information (all 33)
    ORTHOLOGY for barx1 ( Chr: 11 )
    CITATIONS (54)