ZFIN ID: ZDB-GENE-050513-5
Gene Name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
Gene Symbol: sema3c
Sequence Ontology ID : SO:0000704

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Name: si:dkey-105o6.1 (1)

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Location: Chr: 4 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Hatching:Long-pec (48.0h-60.0h)
  caudal tuberculum, otic vesicle
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la015373Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa1359 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa12671 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa15161 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents: MO1-sema3c (1)
    PHENOTYPE
    Data: Fig. 3 from Jiang et al., 2015
    Observed in: enteric neuron, gut innervation
    DISEASE ASSOCIATED WITH sema3c HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process enteric nervous system development (more)
    Cellular Component extracellular space (more)
    Molecular Function neuropilin binding (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001627 (1)
  • InterPro:IPR003599 (1)
  • InterPro:IPR007110 (1)
  • InterPro:IPR013098 (1)
  • InterPro:IPR013783 (1)
  • InterPro:IPR015943 (1)
  • InterPro:IPR016201 (1)
  • InterPro:IPR027231 (1)
  • PROSITE:PS50835 (1)
  • PROSITE:PS51004 (1)
  • Pfam:PF01403 (1)
  • Pfam:PF07679 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sema3c-001 (1) 2141
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sema3c No data available
    MARKER RELATIONSHIPS
    sema3cContained in: [BAC] DKEY-27K7 (1) (order this), DKEY-105O6 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_017355318 (1)
    Genomic GenBank:BX537168 (1) 200744bp Blast at MegaBLAST
    Polypeptide UniProtKB:F1QGW9 (1) 713aa
    Sequence Clusters UniGene:87958 (1)
    Sequence Information (all 12)
    OTHER sema3c GENE PAGES
  • Alliance (1)
  • Gene:553130 (1)
  • VEGA:OTTDARG00000008337 (1)
  • Ensembl(GRCz10):ENSDARG00000034300 (1)
  • ORTHOLOGY for sema3c (Chr: 4)
    CITATIONS (24)