ZFIN ID: ZDB-GENE-050506-73
Gene Name: chloride channel 2c
Gene Symbol: clcn2c
Sequence Ontology ID : SO:0000704

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Previous Names: clc-2c (1), im:6903943 (1), si:ch211-229n1.3

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(Including Attributions)
Location: Chr: 15 Mapping Details/Browsers
Nomenclature History
Note: In pre-publication communications with Alejandro Barrallo Gimeno, it was determined that this gene will be called clcn2c in his upcoming publication.
GENE EXPRESSION
All Expression Data: 13 figures from 3 publications
Directly Submitted Expression Data: 4 figures (10 images) from Thisse et al., 2004 [IMAGE:6903943]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Adult (90d-730d, breeding adult)
  anatomical structure, brain, extension cell, eye (all 19) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa36004 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa42631 Point Mutation Unknown Premature Stop ENU
    Targeting reagents: MO1-clcn2c (1)
    PHENOTYPE
    Data: 2 figures from Wang et al., 2015
    Observed in: anatomical structure, chloride transport
    DISEASE ASSOCIATED WITH clcn2c HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process chloride ion homeostasis (more)
    Cellular Component intracellular (more)
    Molecular Function ion channel activity (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001807 (1)
  • InterPro:IPR014743 (1)
  • Pfam:PF00654 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA clcn2c-001 (1) 2755
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Ab1-clcn2c (1)
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM clcn2c No data available
    MARKER RELATIONSHIPS
    clcn2cContained in: [BAC] CH211-229N1 (1) (order this)
    clcn2cEncodes: [EST] IMAGE:6903943 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001319271 (1)
    Genomic GenBank:CR381579 (1) 130841bp
    Select Tool
    Polypeptide UniProtKB:E7FCE2 (1) 810aa
    Sequence Information (all 10)
    OTHER clcn2c GENE PAGES
  • Alliance (1)
  • Gene:563453 (1)
  • VEGA:OTTDARG00000040369 (1)
  • Ensembl(GRCz10):ENSDARG00000060439 (1)
  • ORTHOLOGY for clcn2c (Chr: 15)
    CITATIONS (17)