Gene

synm

ID

ZDB-GENE-050419-81

Name

synemin, intermediate filament protein

Symbol

synm Nomenclature History

Previous Names

si:dkey-25f3.3 (1)

Type

protein_coding_gene

Location

Chr: 18 Mapping Details/Browsers

Description

Predicted to localize to intermediate filament. Orthologous to human SYNM (synemin).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Deville et al., 2020

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 1 Figure from Deville et al., 2020
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With synm Human Ortholog

No data available

Associated With synm Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR018039	Intermediate filament protein, conserved site
Domain	IPR039008	Intermediate filament, rod domain
Family	IPR030634	Synemin

Domain Details Per Protein

Protein	Length	Intermediate filament protein, conserved site	Intermediate filament, rod domain	Synemin
UniProtKB:A0A8M9P135 InterPro	754
UniProtKB:Q1LX72 InterPro	1073

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	synm-201 (1) Ensembl	Havana	3222 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Isotype	Host Organism	Assay	Source	Citations
Ab1-synm	polyclonal	synm	IgG	Rabbit	WB	Sigma-Aldrich	2

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations