Gene

msi1b

ID

ZDB-GENE-050320-86

Name

musashi RNA binding protein 1b

Symbol

msi1b Nomenclature History

Previous Names

msi1
fb40b12
wu:fb40b12
zgc:103751

Type

protein_coding_gene

Location

Chr: 8 Mapping Details/Browsers

Description

Predicted to have RNA binding activity. Involved in central nervous system development. Predicted to localize to cytoplasm; nucleus; and polysome. Is expressed in central nervous system; eye; and immature eye. Orthologous to human MSI1 (musashi RNA binding protein 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

19 figures from 6 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

MGC:103751 (17 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 1 Figure from Shibata et al., 2012
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With msi1b Human Ortholog

No data available

Associated With msi1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR034126	RNA-binding protein Musashi homologue, RNA recognition motif 2
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA-binding protein Musashi homologue, RNA recognition motif 2	RNA recognition motif domain
UniProtKB:Q5BKV4 InterPro	330

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	msi1-201 (1) Ensembl	Havana	2176 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	msi1-202 (1) Ensembl	Havana	644 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	msi1-204 (1) Ensembl	Havana	807 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	msi1-002 (1) Ensembl	Havana	719 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Host Organism	Assay	Citations
Ab1-msi1	polyclonal	msi1b	Rabbit		1
Ab2-msi1	monoclonal	msi1b	Rat	WB	1
Ab3-msi1	polyclonal	msi1b	Rabbit	IHC	1

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations