ZFIN ID: ZDB-GENE-050320-86
Gene Name: musashi RNA-binding protein 1
Gene Symbol: msi1
Sequence Ontology ID : SO:0000704

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Previous Names: fb40b12, wu:fb40b12, zgc:103751

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(Including Attributions)
Location: Chr: 8 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 17 figures from 5 publications
Directly Submitted Expression Data: 6 figures (17 images) from Thisse et al., 2004 [MGC:103751]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la010184Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la026548Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la026549Tg Transgenic Insertion Unknown Unknown DNA
    Targeting reagents:
    PHENOTYPE
    Data: Fig. 7 from Shibata et al., 2012
    Observed in:
    DISEASE ASSOCIATED WITH msi1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH msi1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process central nervous system development (more)
    Cellular Component cellular_component (more)
    Molecular Function nucleic acid binding (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000504 (1)
  • InterPro:IPR012677 (1)
  • InterPro:IPR034126 (1)
  • InterPro:IPR035979 (1)
  • PROSITE:PS50102 (1)
  • Pfam:PF00076 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA msi1-001 (1) 2176
    ncRNA msi1-002 (1) 719
    mRNA msi1-003 (1) 807
    msi1-004 (1) 644
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM msi1 No data available
    MARKER RELATIONSHIPS
    msi1Contained in: [BAC] DKEY-63D15 (1) (order this)
    msi1Encodes: [EST] fb40b12
    [cDNA] MGC:103751 (1) (order this), MGC:191536 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001013516 (1) 2309bp
    Genomic GenBank:BX005328 (1) 272840bp Blast at MegaBLAST
    Polypeptide UniProtKB:J4C3V8 (1) 349aa
    Sequence Clusters UniGene:36054 (1)
    Sequence Information (all 26)
    OTHER msi1 GENE PAGES
  • Alliance (1)
  • Gene:541389 (1)
  • VEGA:OTTDARG00000022339 (1)
  • Ensembl(GRCz11):ENSDARG00000010710 (2)
  • ORTHOLOGY for msi1 (Chr: 8)
    CITATIONS (31)