ZFIN ID: ZDB-GENE-050306-51
Gene Name: RNA binding motif protein 8A
Gene Symbol: rbm8a
Sequence Ontology ID : SO:0000704

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Previous Names: fb34f03, wu:fb34f03, zgc:110525 (1)

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(Including Attributions)
Location: Chr: 16 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have mRNA binding activity; predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and regulation of alternative mRNA splicing, via spliceosome;  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:110525]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa42812 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rbm8a HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    thrombocytopenia-absent radius syndrome Thrombocytopenia-absent radius syndrome 274000
    DISEASE ASSOCIATED WITH rbm8a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process mRNA splicing, via spliceosome (more)
    Cellular Component nucleus (more)
    Molecular Function mRNA binding (more)
    GO Terms (all 17)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000504 (1)
  • InterPro:IPR008111 (1)
  • InterPro:IPR012677 (1)
  • InterPro:IPR033744 (1)
  • InterPro:IPR035979 (1)
  • PROSITE:PS50102 (1)
  • Pfam:PF00076 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA rbm8a-201 (1) 937
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM rbm8a No data available
    MARKER RELATIONSHIPS
    rbm8aContained in: [BAC] DKEY-45N22 (1) (order this)
    rbm8aEncodes: [EST] fb34f03, IMAGE:6897836 (1) (order this)
    [cDNA] MGC:110525 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001013345 (1) 910bp
    Genomic GenBank:CR933818 (1) 243546bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q5D018 (1) 174aa
    Sequence Clusters UniGene:76821 (1)
    Sequence Information (all 13)
    OTHER rbm8a GENE PAGES
  • Alliance (1)
  • Gene:503767 (1)
  • VEGA:OTTDARG00000027963 (1)
  • Ensembl(GRCz11):ENSDARG00000016516 (2)
  • ORTHOLOGY for rbm8a (Chr: 16)
    CITATIONS (24)