ZFIN ID: ZDB-GENE-050106-1
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Gene Name: transient receptor potential cation channel, subfamily A, member 1b
Gene Symbol: trpa1b
Sequence Ontology ID : SO:0000704

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Previous Names: trpa1l (1), trpa2 (1)

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(Including Attributions)
Location: Chr: 24 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 11 figures from 7 publications
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa9365 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa11221 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa16565 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa30061 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa37842 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • vu197 Point Mutation Unknown Unknown
  • Zebrafish International Resource Center (ZIRC) (order this)
    • Targeting reagents:
    PHENOTYPE
    Data: Fig. 2 from Faucherre et al., 2013
    Observed in:
    DISEASE ASSOCIATED WITH trpa1b HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    ?Episodic pain syndrome, familial, 1 615040
    ?Episodic pain syndrome, familial, 1 615040
    DISEASE ASSOCIATED WITH trpa1b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process detection of chemical stimulus involved in sensory perception (more)
    Cellular Component integral component of membrane (more)
    Molecular Function calcium-release channel activity (more)
    GO Terms (all 16)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR002110 (1)
  • InterPro:IPR005821 (1)
  • InterPro:IPR020683 (1)
  • InterPro:IPR030288 (1)
  • InterPro:IPR036770 (1)
    		•
  • PROSITE:PS50088 (1)
  • PROSITE:PS50297 (1)
    		•
  • Pfam:PF00520 (1)
  • Pfam:PF12796 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA trpa1b-001 (1) 4100
    Select Tool
    trpa1b-002 (1) 3324
    Select Tool
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM trpa1b
    MARKER RELATIONSHIPS
    trpa1bContained in: [BAC] CH211-269F16 (1) (order this), DKEY-112N9 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001007066 (1) 4130bp
    Select Tool
    Genomic GenBank:CR450741 (1) 157603bp
    Select Tool
    Polypeptide UniProtKB:F1R8I6 (1) 1120aa
    Select Tool
    Sequence Clusters UniGene:92897 (1)
    Sequence Information (all 18)
    OTHER trpa1b GENE PAGES
  • Alliance (1)
  • Gene:474353 (1)
  • VEGA:OTTDARG00000021376 (1)
  • Ensembl(GRCz11):ENSDARG00000031875 (2)
    • ORTHOLOGY for trpa1b (Chr: 24)
    CITATIONS (35)