ZFIN ID: ZDB-GENE-050105-1
Gene Name: nuclear receptor subfamily 1, group d, member 1
Gene Symbol: nr1d1
Sequence Ontology ID : SO:0000704

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Previous Names: ear1 (1), Reverbalpha (1)

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Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 21 figures from 9 publications
Directly Submitted Expression Data: 8 figures (13 images) from Thisse et al., 2008 [ay391444]
Wild-type Stages, Structures: Pharyngula:Prim-25 (36.0h-42.0h) to Larval:Days 21-29 (21d-30d, 7.8mm, 10 teeth)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa19994 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sus010 Small Deletion Exon 2 Frameshift TALEN
    sus012 Indel Exon 2 Frameshift TALEN
    Targeting reagents:
    PHENOTYPE
    Data: 4 figures from Huang et al., 2016
    Observed in:
    DISEASE ASSOCIATED WITH nr1d1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH nr1d1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of gene expression (more)
    Cellular Component chromatin (more)
    Molecular Function DNA-binding transcription repressor activity, RNA polymerase II-specific (more)
    GO Terms (all 15)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000536 (1)
  • InterPro:IPR001628 (1)
  • InterPro:IPR001723 (1)
  • InterPro:IPR001728 (1)
  • InterPro:IPR013088 (1)
  • InterPro:IPR035500 (1)
  • PROSITE:PS00031 (1)
  • PROSITE:PS51030 (1)
  • PROSITE:PS51843 (1)
  • Pfam:PF00104 (1)
  • Pfam:PF00105 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA nr1d1-001 (1) 2926
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM nr1d1
    MARKER RELATIONSHIPS
    nr1d1Contained in: [BAC] DKEY-225F5 (1) (order this)
    nr1d1Encodes: [EST] ay391444 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_205729 (1) 2803bp
    Genomic GenBank:BX682558 (1) 146807bp
    Select Tool
    Polypeptide UniProtKB:F1RAU6 (1) 637aa
    Sequence Clusters UniGene:85991 (1)
    Sequence Information (all 16)
    OTHER nr1d1 GENE PAGES
  • Alliance (1)
  • Gene:494487 (1)
  • VEGA:OTTDARG00000019752 (1)
  • Ensembl(GRCz11):ENSDARG00000033160 (2)
  • ORTHOLOGY for nr1d1 (Chr: 3)
    CITATIONS (56)