ZFIN ID: ZDB-GENE-041210-131
Gene Name: PR domain containing 4
Gene Symbol: prdm4    Nomenclature History

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Previous Name: si:dkey-180p18.8

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 4 Mapping Details/Browsers
Description: Predicted to have histone methyltransferase activity. Predicted to be involved in regulation of gene expression. Predicted to localize to nucleus. Is expressed in presumptive neural retina; retina; and somite. Orthologous to human PRDM4 (PR/SET domain 4).
Genome Resources: Alliance (1),  Gene:100000537 (1),  Ensembl(GRCz11):ENSDARG00000017366 (2)
GENE EXPRESSION
All Expression Data: 2 figures from Sun et al., 2008
Wild-type Stages, Structures: Cleavage:2-cell (0.75h-1.0h) to Hatching:Long-pec (48.0h-60.0h)
 
High Throughput Expression: Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa33429 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa33430 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-prdm4 N/A 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH prdm4 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH prdm4 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process transcription by RNA polymerase II (more)
    Cellular Component nucleus (more)
    Molecular Function histone methyltransferase binding (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA prdm4-202 (1)    Ensembl 2339
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM prdm4 No data available
    MARKER RELATIONSHIPS
    prdm4 Contained in: [BAC] DKEY-180P18 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001122743 (1)
    Genomic GenBank:BX571796 (1) 130699 nt
    Select Tool
    Polypeptide UniProtKB:F1R3R6 (1) 822 aa
    Sequence Information (all 13)
    ORTHOLOGY for prdm4 ( Chr: 4 )
    CITATIONS (20)