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ZIRC
ZFIN ID: ZDB-GENE-041111-303
Gene Name: collagen, type VI, alpha 4a
Gene Symbol: col6a4a    Nomenclature History

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Previous Names: col6a4a (1), col6a6, im:7152043 (1), si:dkey-202m9.3

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 16 Mapping Details/Browsers
Description: Predicted to have serine-type endopeptidase inhibitor activity. Involved in axonogenesis and muscle organ development. Is expressed in several structures, including anterior segment eye; musculature system; neural tube; spinal cord; and ventral mesenchyme. Orthologous to human COL6A5 (collagen type VI alpha 5 chain) and COL6A6 (collagen type VI alpha 6 chain).
Genome Resources: Alliance (1),  Gene:564005 (1),  Ensembl(GRCz11):ENSDARG00000079752 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa565 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa5895 Point Mutation Unknown Splice Site ENU
    sa9393 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa12050 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa14196 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa17668 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa22900 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa36205 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa36206 Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa36207 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa36208 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa39119 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa39120 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa44856 Point Mutation Unknown Unknown ENU
    Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-col6a4a N/A 1
    DISEASE ASSOCIATED WITH col6a4a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH col6a4a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process axonogenesis (more)
    Molecular Function serine-type endopeptidase inhibitor activity (more)
    GO Terms (all 3)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA col6a4a-201 (1)    Ensembl 8669
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM col6a4a No data available
    MARKER RELATIONSHIPS
    col6a4a Contained in: [BAC] DKEY-202M9 (1) (order this)
    col6a4a Encodes: [EST] IMAGE:7152043 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_017351531 (1)
    Genomic GenBank:CR942305 (1) 176846 bp
    Select Tool
    Polypeptide UniProtKB:F1Q924 (1) 2543 aa
    Sequence Clusters UniGene:118598 (1)
    Sequence Information (all 21)
    ORTHOLOGY for col6a4a ( Chr: 16 )
    CITATIONS (19)