ZFIN ID: ZDB-GENE-041111-226
Gene Name: synaptosome associated protein 29
Gene Symbol: snap29    Nomenclature History

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Previous Names: fc84f09, im:7145101 (1), si:dkey-178e17.4 (1), wu:fc84f09 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 8 Mapping Details/Browsers
Description: Predicted to have SNAP receptor activity and syntaxin binding activity. Involved in several processes, including epidermis morphogenesis; neuromuscular process; and pronephros morphogenesis. Predicted to localize to SNARE complex and plasma membrane. Used to study CEDNIK syndrome. Human ortholog(s) of this gene implicated in CEDNIK syndrome. Orthologous to human SNAP29 (synaptosome associated protein 29).
Genome Resources: Alliance (1),  Gene:553460 (1),  Ensembl(GRCz11):ENSDARG00000038518 (2)
GENE EXPRESSION
All Expression Data: 3 figures from 3 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7145101]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Days 7-13 (168.0h-14d, 4.5mm, 8 teeth)
 
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
io010 Small Deletion Unknown Frameshift, Premature Stop CRISPR
sa1919 Point Mutation Unknown Splice Site ENU
sa13359 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-snap29
    1
    CRISPR2-snap29 1
    MO1-snap29 N/A 2
    MO2-snap29 N/A 1
    DISEASE ASSOCIATED WITH snap29 HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    CEDNIK syndrome Alliance Cerebral dysgenesis, neuropathy, ichthyosis, and palmoplantar keratoderma syndrome 609528
    DISEASE ASSOCIATED WITH snap29 VIA EXPERIMENTAL MODELS
    Human Disease Fish Conditions Citations
    CEDNIK syndrome snap29sa13359/sa13359 standard conditions Mastrodonato et al., 2019
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process pronephros morphogenesis (more)
    Cellular Component plasma membrane (more)
    Molecular Function SNAP receptor activity (more)
    GO Terms (all 13)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA snap29-201 (1)    Ensembl 773
    snap29-202 (1)    Ensembl 772
    snap29-203 (1)    Ensembl 5756
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM snap29 No data available
    MARKER RELATIONSHIPS
    snap29 Contained in: [BAC] DKEY-178E17 (1) (order this)
    snap29 Encodes: [EST] fc84f09, IMAGE:7145101 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001256256 (1)
    Genomic GenBank:CR788303 (1) 175313 nt
    Select Tool
    Polypeptide UniProtKB:Q502H0 (1) 288 aa
    Sequence Information (all 16)
    ORTHOLOGY for snap29 ( Chr: 8 )
    CITATIONS (23)