ZFIN ID: ZDB-GENE-041105-6
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Gene Name: procollagen, type V, alpha 1
Gene Symbol: col5a1
Sequence Ontology ID : SO:0000704

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Previous Name: si:dkey-87m23.1

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(Including Attributions)
Location: Chr: 21 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have extracellular matrix structural constituent and heparin binding activity; predicted to be involved in cell adhesion and collagen fibril organization; predicted to localize to the  ...
GENE EXPRESSION
All Expression Data: 14 figures from 5 publications
Wild-type Stages, Structures: Cleavage:8-cell (1.25h-1.5h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la028380Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa4934 Point Mutation Unknown Splice Site ENU
    sa5957 Point Mutation Unknown Splice Site ENU
    sa23852 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa37227 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa37228 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa43580 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa45726 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
    • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH col5a1 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    type I Ehlers-Danlos syndrome Ehlers-Danlos syndrome, classic type, 1 130000
    DISEASE ASSOCIATED WITH col5a1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component collagen trimer (more)
    Molecular Function extracellular matrix structural constituent (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000885 (1)
  • InterPro:IPR001791 (1)
  • InterPro:IPR008160 (1)
  • InterPro:IPR013320 (1)
    		•
  • PROSITE:PS51461 (1)
    		•
  • Pfam:PF01391 (1)
  • Pfam:PF01410 (1)
  • Pfam:PF02210 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA col5a1-201 (1) 9581
    Select Tool
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM col5a1 No data available
    MARKER RELATIONSHIPS
    col5a1Contained in: [BAC] CH73-165E7 (1) (order this), CH73-331J9 (1) (order this), DKEY-87M23 (1) (order this)
    [Fosmid] CH1073-153C9 (1) (order this)
    col5a1Has Artifact: [EST] fc69d06
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_021468998 (1)
    Select Tool
    Genomic GenBank:FP102894 (1) 92532bp
    Select Tool
    Polypeptide UniProtKB:F6NPA4 (1) 2011aa
    Select Tool
    Sequence Clusters UniGene:105938 (1)
    Sequence Information (all 34)
    OTHER col5a1 GENE PAGES
  • Alliance (1)
  • Gene:100334431 (1)
  • VEGA:OTTDARG00000028977 (1)
  • Ensembl(GRCz11):ENSDARG00000012593 (2)
    • ORTHOLOGY for col5a1 (Chr: 21)
    CITATIONS (32)