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General Information
ZIRC
ZFIN ID: ZDB-GENE-041105-6
Gene Name: procollagen, type V, alpha 1
Gene Symbol: col5a1
Sequence Ontology ID : SO:0001217

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Previous Name: si:dkey-87m23.1

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(Including Attributions)
Location: Chr: 21 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have extracellular matrix structural constituent and heparin binding activity. Predicted to be involved in cell adhesion and collagen fibril organization. Predicted to localize to the  ...
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la028380Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa4934 Point Mutation Unknown Splice Site ENU
    sa5957 Point Mutation Unknown Splice Site ENU
    sa23852 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa37227 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa37228 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa43580 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45726 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH col5a1 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    type I Ehlers-Danlos syndrome Ehlers-Danlos syndrome, classic type, 1 130000
    DISEASE ASSOCIATED WITH col5a1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cell adhesion (more)
    Cellular Component collagen trimer (more)
    Molecular Function extracellular matrix structural constituent (more)
    GO Terms (all 9)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA col5a1-201 (1) 9581
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM col5a1 No data available
    MARKER RELATIONSHIPS
    col5a1 Contained in: [BAC] CH73-165E7 (1) (order this), CH73-331J9 (1) (order this), DKEY-87M23 (1) (order this)
    [Fosmid] CH1073-153C9 (1) (order this)
    col5a1 Has Artifact: [EST] fc69d06
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_021468998 (1)
    Genomic GenBank:FP102894 (1) 92532 bp
    Select Tool
    Polypeptide UniProtKB:F6NPA4 (1) 2011 aa
    Sequence Clusters UniGene:105938 (1)
    Sequence Information (all 34)
    ORTHOLOGY for col5a1 ( Chr: 21 )
    CITATIONS (33)