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ZIRC
ZFIN ID: ZDB-GENE-041014-367
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Gene Name: NBAS subunit of NRZ tethering complex
Gene Symbol: nbas    Nomenclature History

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Previous Name: si:ch211-214k9.1 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 20 Mapping Details/Browsers
Description: Involved in chordate embryonic development; negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; and nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Predicted to localize to the endoplasmic reticulum. Orthologous to human NBAS (NBAS subunit of NRZ tethering complex).
Genome Resources: Alliance (1),  Gene:556592 (1),  Ensembl(GRCz11):ENSDARG00000008593 (2)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Wild-type Stages, Structures: Blastula:Sphere (4.0h-4.33h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la028252Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa5954 Point Mutation Unknown Premature Stop ENU
    sa8739 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa9535 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa16290 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa16834 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa17866 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa23744 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa23745 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa23746 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa23747 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa32302 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa37080 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
    • sa37081 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa37082 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa43479 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa45707 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
    • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-nbas N/A 3
    MO2-nbas N/A 2
    PHENOTYPE
    Data: 2 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH nbas HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    Infantile liver failure syndrome 2 616483
    Short stature, optic nerve atrophy, and Pelger-Huet anomaly 614800
    DISEASE ASSOCIATED WITH nbas VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process chordate embryonic development (more)
    Cellular Component endoplasmic reticulum (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001680 (1)
  • InterPro:IPR013244 (1)
  • InterPro:IPR029145 (1)
  • InterPro:IPR036322 (1)
  • Pfam:PF08314 (1)
  • Pfam:PF15492 (1)
    • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA nbas-201 (1)    Ensembl 7119
    Select Tool
    nbas-202 (1)    Ensembl 737
    Select Tool
    Browsers: UCSC,  NCBI,  Ensembl,  ZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM nbas No data available
    MARKER RELATIONSHIPS
    nbas Contained in: [BAC] CH211-209E14 (1) (order this), CH211-214K9 (1) (order this), CH211-260K9 (1) (order this), DKEY-79I7 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001044807 (1) 7119 bp
    Select Tool
    Genomic GenBank:BX649299 (1) 199740 bp
    Select Tool
    Polypeptide UniProtKB:Q5TYW4 (1) 2372 aa
    Select Tool
    Sequence Clusters UniGene:133697 (1)
    Sequence Information (all 24)
    ORTHOLOGY for nbas ( Chr: 20 )
    CITATIONS (23)