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ZIRC
ZFIN ID: ZDB-GENE-040927-11
Gene Name: RNA binding fox-1 homolog 1
Gene Symbol: rbfox1
Sequence Ontology ID : SO:0001217

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Previous Names: a2bp1, zgc:103635 (1)

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(Including Attributions)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have mRNA binding activity. Involved in heart contraction; hypothalamus development; and regulation of alternative mRNA splicing, via spliceosome. Predicted to localize to the cytoplasm  ...
GENE EXPRESSION
All Expression Data: 9 figures from 3 publications
Directly Submitted Expression Data: 7 figures (9 images) from Thisse et al., 2004 [MGC:103635]
Wild-type Stages, Structures: Segmentation:10-13 somites (14.0h-16.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa15281 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa15940 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa26072 Point Mutation Unknown Premature Stop ENU
    sa38393 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    DISEASE ASSOCIATED WITH rbfox1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rbfox1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process heart contraction (more)
    Cellular Component cytoplasm (more)
    Molecular Function nucleic acid binding (more)
    GO Terms (all 12)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA rbfox1-002 (1) 662
    mRNA rbfox1-202 (1) 3190
    rbfox1-203 (1) 944
    rbfox1-204 (1) 759
    rbfox1-205 (1) 774
    rbfox1-206 (1) 865
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rbfox1 No data available
    MARKER RELATIONSHIPS
    rbfox1 Contained in: [BAC] CH211-234D12 (1) (order this), DKEY-13A11 (1) (order this), DKEY-23A11 (1) (order this), DKEY-41B16 (1) (order this), DKEY-230M3 (1) (order this)
    rbfox1 Encodes: [cDNA] MGC:103635 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001005596 (1) 1177 bp
    Genomic GenBank:CR792426 (1) 210874 bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q642J5 (1) 373 aa
    Sequence Clusters UniGene:133079 (1)
    Sequence Information (all 52)
    ORTHOLOGY for rbfox1 ( Chr: 3 )
    CITATIONS (29)