ZFIN ID: ZDB-GENE-040927-11
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Gene Name: RNA binding fox-1 homolog 1
Gene Symbol: rbfox1
Sequence Ontology ID : SO:0000704

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Previous Names: a2bp1, zgc:103635 (1)

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Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 9 figures from 3 publications
Directly Submitted Expression Data: 7 figures (9 images) from Thisse et al., 2004 [MGC:103635]
Wild-type Stages, Structures: Segmentation:10-13 somites (14.0h-16.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa15281 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa15940 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa26072 Point Mutation Unknown Premature Stop ENU
    sa38393 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • Targeting reagents:
    PHENOTYPE
    Data: 5 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH rbfox1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rbfox1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process heart contraction (more)
    Cellular Component cytoplasm (more)
    Molecular Function nucleic acid binding (more)
    GO Terms (all 11)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000504 (1)
  • InterPro:IPR012677 (1)
  • InterPro:IPR017325 (1)
  • InterPro:IPR025670 (1)
  • InterPro:IPR034237 (1)
  • InterPro:IPR035979 (1)
    		•
  • PROSITE:PS50102 (1)
    		•
  • Pfam:PF00076 (1)
  • Pfam:PF12414 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA rbfox1-001 (1) 3190
    Select Tool
    ncRNA rbfox1-002 (1) 662
    Select Tool
    mRNA rbfox1-003 (1) 759
    Select Tool
    rbfox1-004 (1) 774
    Select Tool
    rbfox1-005 (1) 944
    Select Tool
    rbfox1-006 (1) 865
    Select Tool
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM rbfox1 No data available
    MARKER RELATIONSHIPS
    rbfox1Contained in: [BAC] CH211-234D12 (1) (order this), DKEY-13A11 (1) (order this), DKEY-23A11 (1) (order this), DKEY-41B16 (1) (order this), DKEY-230M3 (1) (order this)
    rbfox1Encodes: [cDNA] MGC:103635 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001005596 (1) 1177bp
    Select Tool
    Genomic GenBank:CR792426 (1) 210874bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q642J5 (1) 373aa
    Select Tool
    Sequence Clusters UniGene:133079 (1)
    Sequence Information (all 52)
    OTHER rbfox1 GENE PAGES
  • Alliance (1)
  • Gene:449554 (1)
  • VEGA:OTTDARG00000021708 (1)
  • Ensembl(GRCz11):ENSDARG00000014746 (2)
    • ORTHOLOGY for rbfox1 (Chr: 3)
    CITATIONS (28)