ZFIN ID: ZDB-GENE-040912-15
Gene Name: coiled-coil domain containing 47
Gene Symbol: ccdc47    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Name: zgc:92099

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 3 Mapping Details/Browsers
Description: Predicted to have calcium ion binding activity. Predicted to localize to endoplasmic reticulum. Orthologous to human CCDC47 (coiled-coil domain containing 47).
Genome Resources: Alliance (1),  Gene:447812 (1),  Ensembl(GRCz11):ENSDARG00000054362 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:92099]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa20044 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-ccdc47
    1
    CRISPR2-ccdc47
    1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH ccdc47 HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    Trichohepatoneurodevelopmental syndrome 618268
    DISEASE ASSOCIATED WITH ccdc47 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component endoplasmic reticulum (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA ccdc47-201 (1)    Ensembl 2461
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM ccdc47 No data available
    MARKER RELATIONSHIPS
    ccdc47 Contained in: [BAC] DKEY-194J22 (order this)
    ccdc47 Encodes: [cDNA] MGC:92099 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001004551 (1) 2424 nt
    Genomic GenBank:CU062431 (1) 183293 nt
    Select Tool
    Polypeptide UniProtKB:A0A2R8QMB8 (1) 521 aa
    Sequence Information (all 12)
    ORTHOLOGY for ccdc47 ( Chr: 3 )
    CITATIONS (26)