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ZIRC
ZFIN ID: ZDB-GENE-040912-15
Gene Name: coiled-coil domain containing 47
Gene Symbol: ccdc47
Sequence Ontology ID : SO:0001217

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Previous Name: zgc:92099

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Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have calcium ion binding activity. Predicted to localize to the endoplasmic reticulum. Orthologous to human CCDC47 (coiled-coil domain containing 47).
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:92099]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa20044 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH ccdc47 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Trichohepatoneurodevelopmental syndrome 618268
    DISEASE ASSOCIATED WITH ccdc47 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component endoplasmic reticulum (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR012879 (1)
  • Pfam:PF07946 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA ccdc47-201 (1) 2461
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM ccdc47 No data available
    MARKER RELATIONSHIPS
    ccdc47 Contained in: [BAC] DKEY-194J22 (order this)
    ccdc47 Encodes: [cDNA] MGC:92099 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001004551 (1) 2424 bp
    Genomic GenBank:CU062431 (1) 183293 bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8QMB8 (1) 521 aa
    Sequence Clusters UniGene:79744 (1)
    Sequence Information (all 13)
    ORTHOLOGY for ccdc47 ( Chr: 3 )
    CITATIONS (24)