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ZIRC
ZFIN ID: ZDB-GENE-040910-6
Gene Name: synaptonemal complex protein 1
Gene Symbol: sycp1
Sequence Ontology ID : SO:0001217

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(Including Attributions)
Location: Chr: 6 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to be involved in synaptonemal complex assembly. Predicted to localize to the synaptonemal complex. Is expressed in spermatocyte. Orthologous to human SYCP1 (synaptonemal complex protein 1).
GENE EXPRESSION
All Expression Data: 7 figures from 3 publications
Wild-type Stages, Structures: Adult (90d-730d, breeding adult) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la029242Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa7330 Point Mutation Unknown Missense, Splice Site ENU
    sa8777 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH sycp1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH sycp1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process synaptonemal complex assembly (more)
    Cellular Component synaptonemal complex (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR008827 (1)
  • Pfam:PF05483 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sycp1-201 (1) 3440
    sycp1-202 (1) 560
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM sycp1
    MARKER RELATIONSHIPS
    sycp1 Contained in: [BAC] CH211-105J21 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001118894 (1) 3579 bp
    Genomic GenBank:BX005150 (1) 167946 bp
    Select Tool
    Polypeptide UniProtKB:F1QYS1 (1) 1000 aa
    Sequence Clusters UniGene:107962 (1)
    Sequence Information (all 14)
    ORTHOLOGY for sycp1 ( Chr: 6 )
    CITATIONS (23)