ZFIN ID: ZDB-GENE-040910-2
Gene Name: synaptonemal complex protein 3
Gene Symbol: sycp3
Sequence Ontology ID : SO:0000704

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Previous Names: sycp3l, zgc:136951

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(Including Attributions)
Location: Chr: 25 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to be involved in meiotic cell cycle and spermatid development; predicted to localize to the synaptonemal complex; orthologous to several human genes including SYCP3 (synaptonemal complex  ...
GENE EXPRESSION
All Expression Data: 27 figures from 14 publications
Wild-type Stages, Structures: Larval:Days 7-13 (168.0h-14d, 4.5mm, 8 teeth) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa32527 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa44282 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH sycp3 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    azoospermia Pregnancy loss, recurrent, 4 270960
    Spermatogenic failure 4 270960
    spermatogenic failure 4 Pregnancy loss, recurrent, 4 270960
    Spermatogenic failure 4 270960
    DISEASE ASSOCIATED WITH sycp3 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process meiotic cell cycle (more)
    Cellular Component lateral element (more)
    Molecular Function molecular_function (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR006888 (1)
  • Pfam:PF04803 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sycp3-001 (1) 1220
    sycp3-002 (1) 574
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sycp3 No data available
    MARKER RELATIONSHIPS
    sycp3Contained in: [BAC] CH211-59O9 (1) (order this)
    sycp3Encodes: [cDNA] MGC:136951 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001040350 (1) 1237bp
    Genomic GenBank:CR385081 (1) 182806bp
    Select Tool
    Polypeptide UniProtKB:Q1RLP7 (1) 240aa
    Sequence Clusters UniGene:15474 (1)
    Sequence Information (all 11)
    OTHER sycp3 GENE PAGES
  • Alliance (1)
  • Gene:678602 (1)
  • VEGA:OTTDARG00000022499 (1)
  • Ensembl(GRCz11):ENSDARG00000013438 (1)
  • ORTHOLOGY for sycp3 (Chr: 25)
    CITATIONS (46)