header logo image header logo text
Downloads Login
Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-040808-46
Gene Name: stromal cell-derived factor 2-like 1
Gene Symbol: sdf2l1    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: wu:fc55b04, zgc:92449

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 5 Mapping Details/Browsers
Description: Predicted to have dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be involved in ER-associated misfolded protein catabolic process and protein O-linked mannosylation. Predicted to localize to the endoplasmic reticulum membrane. Is expressed in hatching gland; nervous system; notochord; otic vesicle; and polster. Orthologous to human SDF2L1 (stromal cell derived factor 2 like 1).
Genome Resources: Alliance (1),  Gene:445275 (1),  Ensembl(GRCz11):ENSDARG00000035631 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (19 images) from Thisse et al., 2004 [MGC:92449]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH sdf2l1 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH sdf2l1 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process ER-associated misfolded protein catabolic process (more)
Cellular Component membrane (more)
Molecular Function dolichyl-phosphate-mannose-protein mannosyltransferase activity (more)
GO Terms (all 5)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR016093 (1)
  • InterPro:IPR036300 (1)
  • PROSITE:PS50919 (1)
  • Pfam:PF02815 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA sdf2l1-201 (1)    Ensembl 1513
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM sdf2l1 No data available
    MARKER RELATIONSHIPS
    sdf2l1 Contained in: [BAC] CH211-89F7 (1) (order this)
    sdf2l1 Encodes: [EST] fc55b04 (1)
    [cDNA] MGC:92449 (1) (order this), MGC:174350 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001003730 (1) 1460 bp
    Genomic GenBank:BX957246 (1) 186135 bp
    Select Tool
    Polypeptide UniProtKB:A2BIR7 (1) 218 aa
    Sequence Clusters UniGene:51929 (1)
    Sequence Information (all 17)
    ORTHOLOGY for sdf2l1 ( Chr: 5 )
    CITATIONS (19)