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ZIRC
ZFIN ID: ZDB-GENE-040801-140
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Gene Name: interferon-related developmental regulator 2
Gene Symbol: ifrd2    Nomenclature History

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Previous Names: fb94c05, fc05c10, sb:cb936, wu:fb94c05 (1), wu:fc05c10 (1), zgc:100956

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 8 Mapping Details/Browsers
Description: Is expressed in several structures, including alar plate midbrain region; digestive system; midbrain; pectoral fin bud; and segmental plate. Orthologous to human IFRD2 (interferon related developmental regulator 2).
Genome Resources: Alliance (1),  Gene:445227 (1),  Ensembl(GRCz11):ENSDARG00000036811 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (10 images) from Thisse et al., 2001 [cb936]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la016325Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • la029460Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa13644 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa21307 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH ifrd2 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ifrd2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component cellular_component (more)
    GO Terms (all 1)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR006921 (1)
  • InterPro:IPR007701 (1)
  • InterPro:IPR016024 (1)
  • InterPro:IPR039777 (1)
  • Pfam:PF04836 (1)
  • Pfam:PF05004 (1)
    • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA ifrd2-201 (1)    Ensembl 2444
    Select Tool
    ifrd2-202 (1)    Ensembl 756
    Select Tool
    Browsers: UCSC,  NCBI,  Ensembl,  ZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM ifrd2 No data available
    MARKER RELATIONSHIPS
    ifrd2 Contained in: [BAC] DKEY-16C7 (1) (order this)
    ifrd2 Encodes: [EST] cb936 (1) (order this), fb94c05, fc05c10
    [cDNA] MGC:100956 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001003621 (1) 2460 bp
    Select Tool
    Genomic GenBank:CR450777 (1) 97291 bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IV16 (1) 455 aa
    Select Tool
    Sequence Clusters UniGene:33127 (1)
    Sequence Information (all 20)
    ORTHOLOGY for ifrd2 ( Chr: 8 )
    CITATIONS (23)