ZFIN ID: ZDB-GENE-040718-420
Gene Name: clarin 1
Gene Symbol: clrn1
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:91933

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(Including Attributions)
Location: Chr: 15 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 11 figures from 4 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:91933]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
cwr1001 Small Deletion Exon 0 Frameshift, Premature Stop ZINC_FINGER_NUCLEASE
cwr1002 Small Deletion Exon 0 Frameshift, Premature Stop ZINC_FINGER_NUCLEASE
cwr1003 Small Deletion Exon 0 Frameshift, Premature Stop ZINC_FINGER_NUCLEASE
cwr1004 Small Deletion Exon 0 Frameshift, Premature Stop ZINC_FINGER_NUCLEASE
la011760Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 9 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH clrn1 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    retinitis pigmentosa 61 Retinitis pigmentosa 61 614180
    Usher syndrome type 3A Usher syndrome, type 3A 276902
    DISEASE ASSOCIATED WITH clrn1 VIA EXPERIMENTAL MODELS
    Human Disease Fish Conditions Citations
    Usher syndrome clrn1cwr1003/cwr1003 control Gopal et al., 2015
    clrn1cwr1001/cwr1001 control Gopal et al., 2015
    clrn1cwr1002/cwr1002 control Gopal et al., 2015
    clrn1cwr1004/cwr1004 control Gopal et al., 2015
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein localization (more)
    Cellular Component ciliary transition zone (more)
    Molecular Function molecular_function (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR026748 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA clrn1-001 (1) 1429
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM clrn1 No data available
    MARKER RELATIONSHIPS
    clrn1Contained in: [Fosmid] CH1073-270L17 (1) (order this)
    clrn1Encodes: [cDNA] MGC:91933 (1) (order this), MGC:192239 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001002671 (1) 1459bp
    Genomic GenBank:CU929266 (1) 25758bp
    Select Tool
    Polypeptide UniProtKB:Q6DGA8 (1) 232aa
    Sequence Clusters UniGene:89860 (1)
    Sequence Information (all 12)
    OTHER clrn1 GENE PAGES
  • Alliance (1)
  • Gene:436944 (1)
  • VEGA:OTTDARG00000035852 (1)
  • Ensembl(GRCz11):ENSDARG00000102890 (1)
  • ORTHOLOGY for clrn1 (Chr: 15)
    CITATIONS (21)