ZFIN ID: ZDB-GENE-040718-420
Gene Name: clarin 1
Gene Symbol: clrn1
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:91933

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Location: Chr: 15 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 11 figures from 4 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:91933]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
  anterior crista, anterior macula, anterior macula basal region, anterior segment eye (all 33) expand
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
cwr1001 Small Deletion Exon 0 Frameshift, Premature Stop ZINC_FINGER_NUCLEASE
cwr1002 Small Deletion Exon 0 Frameshift, Premature Stop ZINC_FINGER_NUCLEASE
cwr1003 Small Deletion Exon 0 Frameshift, Premature Stop ZINC_FINGER_NUCLEASE
cwr1004 Small Deletion Exon 0 Frameshift, Premature Stop ZINC_FINGER_NUCLEASE
la011760Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents: MO1-clrn1 (1), MO2-clrn1 (1), MO3-clrn1 (1)
    PHENOTYPE
    Data: 9 figures from 2 publications
    Observed in: anterior lateral line neuromast, hair cell stereocilium bundle, hair cell, hair cell anterior macula terminal bouton (all 18) expand
    DISEASE ASSOCIATED WITH clrn1 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    retinitis pigmentosa 61 Retinitis pigmentosa 61 614180
    Usher syndrome type 3A Usher syndrome, type 3A 276902
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein localization (more)
    Cellular Component ciliary transition zone (more)
    Molecular Function molecular_function (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR026748 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA clrn1-001 (1) 1429
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Ab1-clrn1 (1), Ab2-clrn1 (1)
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM clrn1 No data available
    MARKER RELATIONSHIPS
    clrn1Contained in: [Fosmid] CH1073-270L17 (1) (order this)
    clrn1Encodes: [cDNA] MGC:91933 (1) (order this), MGC:192239 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001002671 (1) 1459bp
    Genomic GenBank:CU929266 (1) 25758bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IX37 (1) 243aa
    Sequence Clusters UniGene:89860 (1)
    Sequence Information (all 13)
    OTHER clrn1 GENE PAGES
  • Alliance (1)
  • Gene:436944 (1)
  • VEGA:OTTDARG00000035852 (1)
  • Ensembl(GRCz10):ENSDARG00000102890 (1)
  • ORTHOLOGY for clrn1 (Chr: 15)
    CITATIONS (21)