Gene

sox1a

ID
ZDB-GENE-040718-186
Name
SRY-box transcription factor 1a
Symbol
sox1a Nomenclature History
Previous Names
  • fi38c08
  • fj38h03
  • wu:fi38c08 (1)
  • wu:fj38h03 (1)
  • zgc:92865 (1)
Type
protein_coding_gene
Location
Chr: 9 Mapping Details/Browsers
Description
Contributes to DNA-binding transcription factor activity. Involved in positive regulation of DNA-binding transcription factor activity. Predicted to localize to nuclear chromatin. Is expressed in several structures, including forebrain neural keel; lens placode; nervous system; neural plate; and solid lens vesicle. Orthologous to human SOX1 (SRY-box transcription factor 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
22 figures from 10 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
3 figures from Lekk et al., 2019
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With sox1a Human Ortholog
No data available
Associated With sox1a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR009071 High mobility group box domain
Family IPR022097 Transcription factor SOX
Homologous_superfamily IPR036910 High mobility group box domain superfamily
Domain Details Per Protein
Protein Length High mobility group box domain High mobility group box domain superfamily Transcription factor SOX
UniProtKB:Q6DGL6 336
UniProtKB:B2GNY1 336
Transcripts
Genome Browsers
Type Name Annotation Method Length (nt) Analysis
mRNA sox1a-201 (1) Havana 1929 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations