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ZIRC
ZFIN ID: ZDB-GENE-040426-2904
Gene Name: ER membrane protein complex subunit 3
Gene Symbol: emc3    Nomenclature History

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Previous Names: loc55831, pob, wu:fi32f05, wu:fj63h08, zgc:63727

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 6 Mapping Details/Browsers
Description: Involved in photoreceptor cell maintenance and retina development in camera-type eye. Localizes to the Golgi apparatus and trans-Golgi network transport vesicle. Is expressed in several structures, including brain; digestive system; eye; immature eye; and yolk syncytial layer. Orthologous to human EMC3 (ER membrane protein complex subunit 3).
Genome Resources: Alliance (1),  Gene:406826 (1),  Ensembl(GRCz11):ENSDARG00000020607 (2)
GENE EXPRESSION
All Expression Data: 9 figures from 2 publications
Directly Submitted Expression Data: 7 figures (8 images) from Thisse et al., 2004 [MGC:63727]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Larval:Day 6 (144.0h-168.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
a1 Point Mutation Acceptor Splice Site Missense, Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa12923 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa33938 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE
    Data: 2 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH emc3 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH emc3 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process photoreceptor cell maintenance (more)
    Cellular Component Golgi apparatus (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR002809 (1)
  • InterPro:IPR008568 (1)
  • Pfam:PF01956 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA emc3-201 (1)    Ensembl 2565
    ncRNA emc3-002 (1)    Ensembl 527
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM emc3 No data available
    MARKER RELATIONSHIPS
    emc3 Contained in: [BAC] DKEY-178O3 (1) (order this)
    emc3 Contains: [SNP] rs3727997 (1), rs3727998 (1), rs3727999 (1), rs3728000 (1)
    emc3 Encodes: [EST] fi32f05, fj63h08
    [cDNA] MGC:63727 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_213505 (1) 2549 bp
    Genomic GenBank:BX957236 (1) 211391 bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q7SXW4 (1) 261 aa
    Sequence Clusters UniGene:80620 (1)
    Sequence Information (all 19)
    ORTHOLOGY for emc3 ( Chr: 6 )
    CITATIONS (33)