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ZIRC
ZFIN ID: ZDB-GENE-040426-2410
Gene Name: collagen, type IX, alpha 1b
Gene Symbol: col9a1b
Sequence Ontology ID : SO:0000704

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Previous Names: col9a1, cb339 (1), sb:cb339, wu:fa12a12, wu:fa12d02, wu:fc22c08, wu:fc38d08, zgc:85892

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(Including Attributions)
Location: Chr: 13 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to localize to the collagen trimer. Human ortholog(s) of this gene implicated in Stickler syndrome; multiple epiphyseal dysplasia 6; and osteochondrodysplasia. Orthologous to human COL9A1  ...
PHENOTYPE No data available
DISEASE ASSOCIATED WITH col9a1b HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
multiple epiphyseal dysplasia 6 ?Epiphyseal dysplasia, multiple, 6 614135
Stickler syndrome, type IV 614134
DISEASE ASSOCIATED WITH col9a1b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process growth plate cartilage chondrocyte morphogenesis (more)
Cellular Component collagen trimer (more)
GO Terms (all 5)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001791 (1)
  • InterPro:IPR008160 (1)
  • InterPro:IPR013320 (1)
  • Pfam:PF01391 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA col9a1b-201 (1) 2805
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM col9a1b No data available
    MARKER RELATIONSHIPS
    col9a1bContained in: [BAC] DKEY-49L3 (1) (order this)
    col9a1bEncodes: [EST] cb339 (1) (order this), fa12a12, fa12d02 (1), fc22c08, fc38d08 (1)
    col9a1bHas Artifact: [cDNA] MGC:85892 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_213264 (1) 2919bp
    Genomic GenBank:BX322620 (1) 192504bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8QSK3 (1) 818aa
    Sequence Clusters UniGene:75196 (1)
    Sequence Information (all 24)
    ORTHOLOGY for col9a1b (Chr: 13)
    CITATIONS (20)