ZFIN ID: ZDB-GENE-040426-2140
Gene Name: NOP58 ribonucleoprotein homolog (yeast)
Gene Symbol: nop58
Sequence Ontology ID : SO:0000704

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Previous Names: nol5, NOP5/NOP58 (1), wu:fa93b01 (1), zgc:65841

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(Including Attributions)
Location: Chr: 6 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have snoRNA binding activity; predicted to localize to the box C/D snoRNP complex and small-subunit processome; orthologous to human NOP58 (NOP58 ribonucleoprotein).
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (12 images) from Thisse et al., 2004 [MGC:65841]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.0h-60.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi3118Tg Transgenic Insertion Intron 1 Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la011477Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la025744Tg Transgenic Insertion Unknown Unknown DNA
    PHENOTYPE
    Data: 2 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH nop58 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH nop58 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process rRNA modification (more)
    Cellular Component box C/D snoRNP complex (more)
    Molecular Function snoRNA binding (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR002687 (1)
  • InterPro:IPR012974 (1)
  • InterPro:IPR012976 (1)
  • InterPro:IPR029012 (1)
  • InterPro:IPR036070 (1)
  • PROSITE:PS51358 (1)
  • Pfam:PF01798 (1)
  • Pfam:PF08156 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA nop58-201 (1) 809
    nop58-202 (1) 2190
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM nop58 No data available
    MARKER RELATIONSHIPS
    nop58Contained in: [BAC] CH211-106F9 (1) (order this), DKEY-32H20 (1) (order this)
    nop58Encodes: [EST] fa93b01 (1)
    [cDNA] MGC:65841 (1) (order this), MGC:171387 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001009889 (1) 2149bp
    Genomic GenBank:BX927387 (1) 175517bp
    Select Tool
    Polypeptide UniProtKB:A7MBR5 (1) 553aa
    Sequence Clusters UniGene:5454 (1)
    Sequence Information (all 29)
    OTHER nop58 GENE PAGES
  • Alliance (1)
  • Gene:494152 (1)
  • VEGA:OTTDARG00000036450 (1)
  • Ensembl(GRCz11):ENSDARG00000104353 (1)
  • ORTHOLOGY for nop58 (Chr: 6)
    CITATIONS (26)