ZFIN is now using GRCz12tu for Genomic Data
Gene

kcnip3a

ID
ZDB-GENE-040426-1791
Name
Kv channel interacting protein 3a, calsenilin
Symbol
kcnip3a Nomenclature History
Previous Names
  • csenl
  • kcnip3l
  • zgc:73400
Type
protein_coding_gene
Location
Chr: 8 Mapping Details/Browsers
Genome Assembly
GRCz12tu
Annotation Status
Current
Description
Predicted to enable several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; calcium ion binding activity; and potassium channel regulator activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; regulation of potassium ion transmembrane transport; and regulation of signal transduction. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in nucleus. Is expressed in nervous system. Orthologous to human KCNIP3 (potassium voltage-gated channel interacting protein 3).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
5 figures from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With kcnip3a Human Ortholog
No data available
Associated With kcnip3a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Binding_site IPR018247 EF-Hand 1, calcium-binding site
Domain IPR002048 EF-hand domain
Family IPR028846 Recoverin family
Homologous_superfamily IPR011992 EF-hand domain pair
Domain Details Per Protein
Protein Additional Resources Length EF-Hand 1, calcium-binding site EF-hand domain EF-hand domain pair Recoverin family
UniProtKB:A0A8M3B545 InterPro 256
UniProtKB:A0A8M3B269 InterPro 233
UniProtKB:A0A8M2BGD4 InterPro 259
UniProtKB:A0A8M3AVE6 InterPro 231
UniProtKB:Q6PBH8 InterPro 257
UniProtKB:A0A8M3BC02 InterPro 231
UniProtKB:A0A8M9PQR8 InterPro 214
UniProtKB:A0AB32U174 InterPro 233
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
ncRNA kcnip3a-001 (1)
Ensembl
Ensembl 1,309 nt
ZFIN BLAST
ncRNA kcnip3a-002 (1)
Ensembl
Ensembl 867 nt
ZFIN BLAST
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Genome Browsers
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations
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