ZFIN ID: ZDB-GENE-040426-17
Gene Name: jumonji domain containing 6
Gene Symbol: jmjd6
Sequence Ontology ID : SO:0000704

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Previous Names: psr (1), ptdsr (1), zfpsr (1), zgc:66264

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(Including Attributions)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 4 figures from 3 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7151542]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
  anatomical structure, brain, hatching gland, heart (all 8) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa33340 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents: MO1-jmjd6 (1), MO2-jmjd6 (1)
    PHENOTYPE
    Data: 5 figures from Hong et al., 2004
    Observed in: anatomical structure, apoptotic cell clearance, atrium, brain (all 21) expand
    DISEASE ASSOCIATED WITH jmjd6 HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process phagocytosis (more)
    Cellular Component nucleolus (more)
    Molecular Function histone demethylase activity (H3-R2 specific) (more)
    GO Terms (all 23)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003347 (1)
  • PROSITE:PS51184 (1)
  • Pfam:PF02373 (1)
  • EC:1.14.11.- (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA jmjd6-001 (1) 1523
    ncRNA jmjd6-002 (1) 3116
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM jmjd6 No data available
    MARKER RELATIONSHIPS
    jmjd6Contained in: [BAC] CH73-366L1 (1) (order this)
    jmjd6Encodes: [EST] IMAGE:7151542 (1) (order this)
    [cDNA] MGC:66264 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_170761 (1) 3142bp
    Genomic GenBank:CU463857 (1) 96746bp
    Select Tool
    Polypeptide UniProtKB:Q6PFM0 (1) 403aa
    Sequence Clusters UniGene:86243 (1)
    Sequence Information (all 16)
    OTHER jmjd6 GENE PAGES
  • Alliance (1)
  • Gene:266962 (1)
  • VEGA:OTTDARG00000035195 (1)
  • Ensembl(GRCz10):ENSDARG00000102896 (1)
  • ORTHOLOGY for jmjd6 (Chr: 3)
    CITATIONS (22)