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ZIRC
ZFIN ID: ZDB-GENE-040426-1474
Gene Name: charged multivesicular body protein 1A
Gene Symbol: chmp1a
Sequence Ontology ID : SO:0000704

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Previous Names: pcoln3, wu:fb50a12, zgc:65914, zgc:85863

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(Including Attributions)
Location: Chr: 25 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Involved in cerebellum development; predicted to localize to the ESCRT III complex and multivesicular body; orthologous to human CHMP1A (charged multivesicular body protein 1A).
GENE EXPRESSION
All Expression Data: Fig. S3 from Mochida et al., 2012
Wild-type Stages, Structures: Hatching:Long-pec (48.0h-60.0h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la023361Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa44367 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    DISEASE ASSOCIATED WITH chmp1a HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    pontocerebellar hypoplasia type 8 Pontocerebellar hypoplasia, type 8 614961
    DISEASE ASSOCIATED WITH chmp1a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cerebellum development (more)
    Cellular Component cytoplasm (more)
    GO Terms (all 13)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR005024 (1)
  • InterPro:IPR029888 (1)
  • Pfam:PF03357 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA chmp1a-002 (1) 552
    mRNA chmp1a-203 (1) 1172
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM chmp1a No data available
    MARKER RELATIONSHIPS
    chmp1aContained in: [Fosmid] CH1073-288B16 (1) (order this)
    chmp1aEncodes: [EST] fb50a12 (1)
    [cDNA] MGC:65914 (1) (order this), MGC:85863 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200563 (1) 1569bp
    Genomic GenBank:CU633770 (1) 35489bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IZC4 (1) 198aa
    Sequence Clusters UniGene:10291 (1)
    Sequence Information (all 23)
    ORTHOLOGY for chmp1a (Chr: 25)
    CITATIONS (25)