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ZIRC
ZFIN ID: ZDB-GENE-040426-1072
Gene Name: upstream transcription factor 1
Gene Symbol: usf1
Sequence Ontology ID : SO:0001217

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Previous Name: zgc:56547

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(Including Attributions)
Location: Chr: 15 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have protein dimerization activity. Human ortholog(s) of this gene implicated in cardiovascular system disease and type 2 diabetes mellitus. Orthologous to human USF1 (upstream  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56547]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
PHENOTYPE No data available
DISEASE ASSOCIATED WITH usf1 HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
{Hyperlipidemia, familial combined, susceptibility to} 602491
DISEASE ASSOCIATED WITH usf1 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Molecular Function protein dimerization activity (more)
GO Terms (all 1)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR011598 (1)
  • InterPro:IPR036638 (1)
  • PROSITE:PS50888 (1)
  • Pfam:PF00010 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA usf1-201 (1) 1492
    usf1-202 (1) 710
    usf1-203 (1) 402
    usf1-204 (1) 931
    usf1-205 (1) 579
    usf1-206 (1) 832
    aberrant processed transcript usf1-207 (1) 1450
    mRNA usf1-208 (1) 765
    usf1-209 (1) 805
    usf1-210 (1) 838
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM usf1 No data available
    MARKER RELATIONSHIPS
    usf1 Contained in: [BAC] DKEY-105H12 (1) (order this)
    usf1 Encodes: [cDNA] MGC:56547 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200296 (1) 1512 bp
    Genomic GenBank:BX663520 (1) 248279 bp Blast at MegaBLAST
    Polypeptide UniProtKB:F1QUA1 (1) 309 aa
    Sequence Clusters UniGene:132979 (1)
    Sequence Information (all 41)
    ORTHOLOGY for usf1 ( Chr: 15 )
    CITATIONS (18)