ZFIN Gene: usf1

ZFIN ID: ZDB-GENE-040426-1072

ZFIN ID: ZDB-GENE-040426-1072

Gene Name:

upstream transcription factor 1

Gene Symbol:

usf1

Sequence Ontology ID :

SO:0001217

Previous Name:

zgc:56547

Location:

Chr: 15 Mapping Details/Browsers

Nomenclature History

AUTOMATED DESCRIPTION

Predicted to have protein dimerization activity. Human ortholog(s) of this gene implicated in cardiovascular system disease and type 2 diabetes mellitus. Orthologous to human USF1 (upstream ...

GENE EXPRESSION
Directly Submitted Expression Data:	1 figure (1 image) from Thisse et al., 2004 [MGC:56547]
Wild-type Stages, Structures:	Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
	unspecified
Curated Microarray Expression:	GEO (1)

MUTATIONS AND SEQUENCE TARGETING REAGENTS

Allele	Type	Localization	Consequence	Mutagen	Suppliers
sa8978	Point Mutation	Unknown	Splice Site	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa10575	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa22630	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)

PHENOTYPE No data available

DISEASE ASSOCIATED WITH usf1 HUMAN ORTHOLOG

Disease Ontology Term	OMIM Term	OMIM Phenotype ID
	{Hyperlipidemia, familial combined, susceptibility to}	602491

DISEASE ASSOCIATED WITH usf1 VIA EXPERIMENTAL MODELS No data available

GENE ONTOLOGY

Ontology	GO Term
Molecular Function	protein dimerization activity (more)

GO Terms (all 1)

PROTEIN FAMILIES, DOMAINS AND SITES
InterPro:IPR011598 (1) InterPro:IPR036638 (1)	PROSITE:PS50888 (1)	Pfam:PF00010 (1)

TRANSCRIPTS
Type	Name	Length (bp)	Analysis
mRNA	usf1-201 (1)	1492	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	usf1-202 (1)	710	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	usf1-203 (1)	402	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	usf1-204 (1)	931	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	usf1-205 (1)	579	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	usf1-206 (1)	832	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
aberrant processed transcript	usf1-207 (1)	1450	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	usf1-208 (1)	765	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	usf1-209 (1)	805	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	usf1-210 (1)	838	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

GENE PRODUCT DESCRIPTION No description available

INTERACTIONS AND PATHWAYS

ANTIBODIES No data available

PLASMIDS No data available

CONSTRUCTS WITH SEQUENCES FROM usf1 No data available

MARKER RELATIONSHIPS

usf1 Contained in:	[BAC] DKEY-105H12 (1) (order this)
usf1 Encodes:	[cDNA] MGC:56547 (1) (order this)

SEQUENCE INFORMATION

Type	Accession #	Length (bp/aa)	Analysis
RNA	RefSeq:NM_200296 (1)	1512 bp	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX663520 (1)	248279 bp	Blast at MegaBLAST
Polypeptide	UniProtKB:F1QUA1 (1)	309 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
Sequence Clusters	UniGene:132979 (1)

Sequence Information (all 41)

OTHER usf1 GENE PAGES

Alliance (1)

Gene:393266 (1)

VEGA:OTTDARG00000022885 (1)

Ensembl(GRCz11):ENSDARG00000041689 (2)

ORTHOLOGY for usf1 ( Chr: 15 )

CITATIONS (18)

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