ZFIN ID: ZDB-GENE-031222-3
Gene Name: solute carrier family 13 member 1
Gene Symbol: slc13a1    Nomenclature History

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Previous Name: sb:cb1073 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 25 Mapping Details/Browsers
Description: Exhibits sodium:sulfate symporter activity. Involved in sodium ion transport and sulfate transport. Predicted to localize to integral component of membrane. Is expressed in brain; eye; and pleuroperitoneal region. Orthologous to human SLC13A1 (solute carrier family 13 member 1).
Genome Resources: Alliance (1),  Gene:387592 (1),  Ensembl(GRCz11):ENSDARG00000045638 (1)
GENE EXPRESSION
All Expression Data: 14 figures from 5 publications
Directly Submitted Expression Data: 2 figures (7 images) from Thisse et al., 2001 [cb1073]
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Adult (90d-730d, breeding adult)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa32538 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45856 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH slc13a1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH slc13a1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process sodium ion transport (more)
    Cellular Component integral component of membrane (more)
    Molecular Function sodium:sulfate symporter activity (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA slc13a1-201 (1)    Ensembl 2571
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM slc13a1 No data available
    MARKER RELATIONSHIPS
    slc13a1 Contained in: [BAC] CH211-245M13 (1)
    slc13a1 Encodes: [EST] cb1073 (1) (order this)
    [cDNA] MGC:66005 (1), MGC:77545 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_199281 (1) 2447 nt
    Genomic GenBank:BX322610 (1) 72706 nt
    Select Tool
    Polypeptide UniProtKB:A0A2R8QHF0 (1) 597 aa
    Sequence Information (all 14)
    ORTHOLOGY for slc13a1 ( Chr: 25 )
    CITATIONS (24)