ZFIN ID: ZDB-GENE-031126-1
Gene Name: scavenger receptor class B, member 1
Gene Symbol: scarb1
Sequence Ontology ID : SO:0000704

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Previous Name: cb1015 (1)

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(Including Attributions)
Location: Chr: 10 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to localize to the integral component of membrane; orthologous to human SCARB1 (scavenger receptor class B member 1).
GENE EXPRESSION
All Expression Data: 4 figures from 2 publications
Directly Submitted Expression Data: 3 figures (5 images) from Thisse et al., 2001 [cb1015]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Segmentation:14-19 somites (16.0h-19.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH scarb1 HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
[High density lipoprotein cholesterol level QTL6] 610762
DISEASE ASSOCIATED WITH scarb1 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Cellular Component integral component of membrane (more)
GO Terms (all 2)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR002159 (1)
  • InterPro:IPR005428 (1)
  • Pfam:PF01130 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA scarb1-001_dup (1) 1491
    scarb1-201 (1) 773
    scarb1-203 (1) 436
    scarb1-204 (1) 2598
    aberrant processed transcript scarb1-206 (1) 844
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM scarb1 No data available
    MARKER RELATIONSHIPS
    scarb1Contained in: [BAC] CH211-226M13 (2) (order this)
    scarb1Encodes: [EST] cb1015 (1) (order this)
    [cDNA] MGC:55861 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_198921 (1) 1788bp
    Genomic GenBank:CU463283 (1) 121463bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8QFD1 (1) 522aa
    Sequence Clusters UniGene:80542 (1)
    Sequence Information (all 27)
    OTHER scarb1 GENE PAGES
  • Alliance (1)
  • Gene:387260 (1)
  • VEGA:OTTDARG00000030827 (1)
  • Ensembl(GRCz11):ENSDARG00000101557 (1)
  • ORTHOLOGY for scarb1 (Chr: 10)
    CITATIONS (20)