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ZFIN ID: ZDB-GENE-031030-3
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Gene Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
Gene Symbol: ddx49
Sequence Ontology ID : SO:0000704

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Previous Names: wu:fb82g04 (1), wu:fd12e05

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(Including Attributions)
Location: Chr: 11 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have RNA binding activity and RNA helicase activity. Predicted to be involved in rRNA processing. Predicted to localize to the nucleus. Orthologous to human DDX49 (DEAD-box helicase 49).
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56128]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa4404 Point Mutation Unknown Premature Stop ENU
sa24887 Point Mutation Unknown Splice Site ENU
PHENOTYPE No data available
DISEASE ASSOCIATED WITH ddx49 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH ddx49 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process RNA secondary structure unwinding (more)
Cellular Component cytoplasm (more)
Molecular Function ATP binding (more)
GO Terms (all 9)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000629 (1)
  • InterPro:IPR001650 (1)
  • InterPro:IPR011545 (1)
  • InterPro:IPR014001 (1)
  • InterPro:IPR014014 (1)
  • InterPro:IPR027417 (1)
    		•
  • PROSITE:PS00039 (1)
  • PROSITE:PS51192 (1)
  • PROSITE:PS51194 (1)
  • PROSITE:PS51195 (1)
    		•
  • Pfam:PF00270 (1)
  • Pfam:PF00271 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA ddx49-003 (1) 604
    Select Tool
    mRNA ddx49-201 (1) 1632
    Select Tool
    ddx49-203 (1) 799
    Select Tool
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM ddx49 No data available
    MARKER RELATIONSHIPS
    ddx49Contained in: [BAC] CH211-255D18 (1) (order this)
    ddx49Encodes: [EST] fb82g04 (1), fd12e05
    [cDNA] MGC:56128 (1) (order this), MGC:86694 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_198365 (1) 1729bp
    Select Tool
    Genomic GenBank:BX936438 (1) 188269bp
    Select Tool
    Polypeptide UniProtKB:Q5RGB7 (1) 468aa
    Select Tool
    Sequence Clusters UniGene:77634 (1)
    Sequence Information (all 37)
    OTHER ddx49 GENE PAGES
  • Alliance (1)
  • Gene:386632 (1)
  • VEGA:OTTDARG00000011001 (1)
  • Ensembl(GRCz11):ENSDARG00000012899 (2)
    • ORTHOLOGY for ddx49 (Chr: 11)
    CITATIONS (20)