ZFIN ID: ZDB-GENE-031006-4
Gene Name: 4-aminobutyrate aminotransferase
Gene Symbol: abat
Sequence Ontology ID : SO:0000704

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: GABA-T (1), cb880 (1), fj82a01, wu:fj82a01 (1)

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 4 figures (9 images) from Thisse et al., 2001 [cb880]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Hatching:Long-pec (48.0h-60.0h)
  blood, central nervous system, diencephalon, hindbrain (all 12) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la028889Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38392 Point Mutation Unknown Premature Stop ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH abat HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    GABA aminotransferase deficiency GABA-transaminase deficiency 613163
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process gamma-aminobutyric acid metabolic process (more)
    Molecular Function 4-aminobutyrate transaminase activity (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR004631 (1)
  • InterPro:IPR005814 (1)
  • InterPro:IPR015421 (1)
  • InterPro:IPR015422 (1)
  • InterPro:IPR015424 (1)
  • PROSITE:PS00600 (1)
  • Pfam:PF00202 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA abat-001 (1) 2179
    ncRNA abat-002 (1) 666
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM abat No data available
    MARKER RELATIONSHIPS
    abatContained in: [BAC] CH73-86A17 (1) (order this)
    abatEncodes: [EST] cb880 (1) (order this), fj82a01
    [cDNA] MGC:55707 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_201498 (1) 2253bp
    Genomic GenBank:CU464204 (1) 93246bp
    Select Tool
    Polypeptide UniProtKB:I3IRW7 (1) 500aa
    Sequence Clusters UniGene:76989 (1)
    Sequence Information (all 13)
    OTHER abat GENE PAGES
  • Gene:378968 (1)
  • VEGA:OTTDARG00000035219 (1)
  • Ensembl(GRCz10):ENSDARG00000006031 (1)
  • ORTHOLOGY for abat (Chr: 3)
    CITATIONS (27)