ZFIN ID: ZDB-GENE-031006-4
Gene Name: 4-aminobutyrate aminotransferase
Gene Symbol: abat
Sequence Ontology ID : SO:0000704

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Previous Names: GABA-T (1), cb880 (1), fj82a01, wu:fj82a01 (1)

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(Including Attributions)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 4 figures (9 images) from Thisse et al., 2001 [cb880]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Hatching:Long-pec (48.0h-60.0h)
  blood, central nervous system, diencephalon, hindbrain (all 12) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la028889Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38392 Point Mutation Unknown Premature Stop ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH abat HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    GABA aminotransferase deficiency GABA-transaminase deficiency 613163
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process gamma-aminobutyric acid metabolic process (more)
    Molecular Function 4-aminobutyrate transaminase activity (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR004631 (1)
  • InterPro:IPR005814 (1)
  • InterPro:IPR015421 (1)
  • InterPro:IPR015422 (1)
  • InterPro:IPR015424 (1)
  • PROSITE:PS00600 (1)
  • Pfam:PF00202 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA abat-001 (1) 2179
    ncRNA abat-002 (1) 666
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYSNo data available
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM abat No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    abatContained in: [BAC] CH73-86A17 (1) (order this)
    abatEncodes: [EST] cb880 (1) (order this), fj82a01
    [cDNA] MGC:55707 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_201498 (1) 2253bp
    Genomic GenBank:CU464204 (1) 93246bp
    Select Tool
    Polypeptide UniProtKB:I3IRW7 (1) 500aa
    Sequence Clusters UniGene:76989 (1)
    Sequence Information (all 17)
    OTHER abat GENE PAGES
  • Gene:378968 (1)
  • VEGA:OTTDARG00000035219 (1)
  • Ensembl(GRCz10):ENSDARG00000006031 (1)
  • ORTHOLOGY for abat (Chr: 3)
    CITATIONS (27)