ZFIN ID: ZDB-GENE-030804-1
Gene Name: tenascin R (restrictin, janusin)
Gene Symbol: tnr
Sequence Ontology ID : SO:0000704

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Name:

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Location: Chr: 2 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Involved in axon guidance; predicted to localize to the collagen-containing extracellular matrix; orthologous to human TNR (tenascin R).
GENE EXPRESSION
All Expression Data: 4 figures from 2 publications
Wild-type Stages, Structures: Larval:Protruding-mouth (72.0h-96.0h, 3.5mm) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la014925Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la023629Tg Transgenic Insertion Unknown Unknown DNA
    sa6854 Point Mutation Unknown Premature Stop ENU
    sa30599 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa31286 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa44538 Point Mutation Unknown Unknown ENU
    Targeting reagents:
    PHENOTYPE
    Data: Fig. 4 from Becker et al., 2003
    Observed in:
    DISEASE ASSOCIATED WITH tnr HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH tnr VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process axon guidance (more)
    Cellular Component collagen-containing extracellular matrix (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000742 (1)
  • InterPro:IPR002181 (1)
  • InterPro:IPR003961 (1)
  • InterPro:IPR013032 (1)
  • InterPro:IPR013783 (1)
  • InterPro:IPR020837 (1)
  • InterPro:IPR033079 (1)
  • InterPro:IPR036056 (1)
  • InterPro:IPR036116 (1)
  • InterPro:IPR041161 (1)
  • PROSITE:PS00022 (1)
  • PROSITE:PS00514 (1)
  • PROSITE:PS01186 (1)
  • PROSITE:PS50853 (1)
  • PROSITE:PS51406 (1)
  • Pfam:PF00041 (1)
  • Pfam:PF00147 (1)
  • Pfam:PF18720 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA tnr-201 (1) 5056
    tnr-202 (1) 468
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM tnr No data available
    MARKER RELATIONSHIPS
    tnrContained in: [BAC] CH73-9B13 (1) (order this), CH73-12O5 (1) (order this), CH73-100G16 (1) (order this), CH211-214F1 (1) (order this), DKEY-147D11 (1) (order this)
    tnrEncodes: [cDNA] MGC:193575 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_194383 (1) 4933bp
    Genomic GenBank:CT027627 (1) 177228bp
    Select Tool
    Polypeptide UniProtKB:A2CF37 (1) 1350aa
    Sequence Clusters UniGene:88831 (1)
    Sequence Information (all 23)
    OTHER tnr GENE PAGES
  • Alliance (1)
  • Gene:369191 (1)
  • VEGA:OTTDARG00000032587 (1)
  • Ensembl(GRCz11):ENSDARG00000020771 (2)
  • ORTHOLOGY for tnr (Chr: 2)
    CITATIONS (23)