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ZIRC
ZFIN ID: ZDB-GENE-030710-3
Gene Name: reticulon 1b
Gene Symbol: rtn1b
Sequence Ontology ID : SO:0000704

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Previous Names: rtn1, rtn1l, wu:fa21b09 (1), wu:fj35h01 (1)

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(Including Attributions)
Location: Chr: 20 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to localize to the endoplasmic reticulum membrane and integral component of membrane. Orthologous to human RTN1 (reticulon 1).
GENE EXPRESSION
All Expression Data: 5 figures from 2 publications
Directly Submitted Expression Data: 4 figures (8 images) from Thisse et al., 2004 [IMAGE:6903043]
Wild-type Stages, Structures: Blastula:1k-cell (3.0h-3.33h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa37007 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa43416 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rtn1b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rtn1b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component endoplasmic reticulum (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003388 (1)
  • PROSITE:PS50845 (1)
  • Pfam:PF02453 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA rtn1b-003 (1) 823
    mRNA rtn1b-201 (1) 1836
    rtn1b-202 (1) 3525
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM rtn1b No data available
    MARKER RELATIONSHIPS
    rtn1bContained in: [BAC] CH211-253P18 (1) (order this)
    rtn1bContains: [SNP] rs3729023 (1), rs3729024 (1)
    rtn1bEncodes: [EST] fa21b09, fj35h01, IMAGE:5915483, IMAGE:6903043 (1) (order this)
    [cDNA] MGC:171399 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001029948 (1) 1836bp
    Genomic GenBank:BX088722 (1) 195359bp
    Select Tool
    Polypeptide UniProtKB:F1R540 (1) 767aa
    Sequence Clusters UniGene:673 (1)
    Sequence Information (all 37)
    ORTHOLOGY for rtn1b (Chr: 20)
    CITATIONS (28)