ZFIN ID: ZDB-GENE-030515-1
Gene Name: RAB40c, member RAS oncogene family
Gene Symbol: rab40c    Nomenclature History

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Previous Names: cb453 (1), wu:fk50d06, zgc:136966

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 3 Mapping Details/Browsers
Description: Predicted to have GTPase activity. Predicted to be involved in Rab protein signal transduction; intracellular protein transport; and protein localization to plasma membrane. Predicted to localize to endosome; plasma membrane; and synaptic vesicle. Is expressed in central nervous system; cranial ganglion; forebrain; and retina. Orthologous to human RAB40C (RAB40C, member RAS oncogene family).
Genome Resources: Alliance (1),  Gene:678600 (1),  Ensembl(GRCz11):ENSDARG00000061208 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (17 images) from Thisse et al., 2001 [cb453]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.0h-60.0h)
 
High Throughput Expression: GEO (1) Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la024054Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa26065 Point Mutation Unknown Premature Stop ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rab40c HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rab40c VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process intracellular signal transduction (more)
    Cellular Component endosome (more)
    Molecular Function GTPase activity (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA rab40c-201 (1)    Ensembl 3407
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    CONSTRUCTS WITH SEQUENCES FROM rab40c No data available
    MARKER RELATIONSHIPS
    rab40c Contained in: [BAC] DKEY-202L16 (1) (order this)
    rab40c Encodes: [EST] cb453 (1), fk50d06
    [cDNA] MGC:136966 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001040348 (1) 3196 nt
    Genomic GenBank:BX470132 (1) 163404 nt
    Select Tool
    Polypeptide UniProtKB:Q1RLP4 (1) 279 aa
    Sequence Information (all 13)
    ORTHOLOGY for rab40c ( Chr: 3 )
    CITATIONS (27)