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General Information
ZIRC
ZFIN ID: ZDB-GENE-030430-2
Gene Name: Sp5 transcription factor a
Gene Symbol: sp5a
Sequence Ontology ID : SO:0000704

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Previous Names: sp5, bts1 (1), fc39b01, wu:fc39b01 (1)

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(Including Attributions)
Location: Chr: 9 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA-binding activity transcription factor activity, RNA polymerase II-specific; involved in mesoderm morphogenesis; predicted to localize to the nucleus; orthologous to human SP5  ...
GENE EXPRESSION
All Expression Data: 4 figures from 4 publications
Wild-type Stages, Structures: Gastrula:Shield (6.0h-8.0h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa45343 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH sp5a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH sp5a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process mesoderm morphogenesis (more)
    Cellular Component nucleus (more)
    Molecular Function metal ion binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR013087 (1)
  • InterPro:IPR036236 (1)
  • PROSITE:PS00028 (1)
  • PROSITE:PS50157 (1)
  • Pfam:PF00096 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sp5a-201 (1) 3084
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    SignaFish
    ANTIBODIESNo data available
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM sp5a No data available
    MARKER RELATIONSHIPS
    sp5aContained in: [BAC] DKEY-88M1 (1) (order this), DKEY-249G23 (1) (order this)
    sp5aEncodes: [EST] fc39b01 (1)
    [cDNA] MGC:194009 (1) (order this), MGC:194038 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_180973 (1) 3062bp
    Genomic GenBank:CR394567 (1) 189488bp
    Select Tool
    Polypeptide UniProtKB:B0S6I8 (1) 368aa
    Sequence Clusters UniGene:78633 (1)
    Sequence Information (all 19)
    ORTHOLOGY for sp5a (Chr: 9)
    CITATIONS (30)