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General Information
ZIRC
ZFIN ID: ZDB-GENE-030408-5
Gene Name: BCAS2 pre-mRNA processing factor
Gene Symbol: bcas2
Sequence Ontology ID : SO:0000704

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Previous Names: cb302 (1), zgc:101730

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(Including Attributions)
Location: Chr: 8 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to be involved in mRNA splicing, via spliceosome. Predicted to localize to the Prp19 complex and U2-type catalytic step 2 spliceosome. Human ortholog(s) of this gene implicated in breast  ...
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (12 images) from Thisse et al., 2001 [cb302]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH bcas2 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH bcas2 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process mRNA splicing, via spliceosome (more)
Cellular Component nucleus (more)
Molecular Function molecular_function (more)
GO Terms (all 10)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR008409 (1)
  • Pfam:PF05700 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA bcas2-201 (1) 1110
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM bcas2 No data available
    MARKER RELATIONSHIPS
    bcas2Contained in: [BAC] DKEYP-46C9 (1)
    bcas2Encodes: [EST] cb302 (1)
    [cDNA] MGC:101730 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001007774 (1) 1117bp
    Genomic GenBank:BX321886 (1) 168093bp
    Select Tool
    Polypeptide UniProtKB:Q5RKQ0 (1) 225aa
    Sequence Clusters UniGene:4101 (1)
    Sequence Information (all 11)
    ORTHOLOGY for bcas2 (Chr: 8)
    CITATIONS (23)