ZFIN ID: ZDB-GENE-030404-2
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Gene Name: mindbomb E3 ubiquitin protein ligase 1
Gene Symbol: mib1
Sequence Ontology ID : SO:0000704

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Previous Names: mib, cg5841 (1), chunp6889, fe47f05, im:7148100 (1), KIAA1323 (1), mind bomb, white tail (3), wit (3), wu:fe47f05 (1)

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(Including Attributions)
Location: Chr: 2 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 11 figures from 9 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7148100]
  1 figure (1 image) from Thisse et al., 2005 [eu763]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi904Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • m132 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
    • m178 Point Mutation Unknown Premature Stop ENU
    mib1_unspecified Unspecified Unknown Unknown
    nn2000 Point Mutation Unknown Premature Stop ENU
    nn2001 Insertion Unknown Unknown ENU
    sa31118 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa44378 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • ta52b Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • tfi91 Point Mutation Unknown Premature Stop
    tfi101 Point Mutation Unknown Missense
    Targeting reagents:
    PHENOTYPE
    Data: 117 figures from 69 publications
    Observed in:
    DISEASE ASSOCIATED WITH mib1 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Left ventricular noncompaction 7 615092
    DISEASE ASSOCIATED WITH mib1 VIA EXPERIMENTAL MODELS
    Human Disease Fish Conditions Citations
    epilepsy mib1hi904Tg/hi904Tg standard conditions Hortopan et al., 2010
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein autoubiquitination (more)
    Cellular Component cytoplasm (more)
    Molecular Function protein homodimerization activity (more)
    GO Terms (all 85)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000433 (1)
  • InterPro:IPR001841 (1)
  • InterPro:IPR002110 (1)
  • InterPro:IPR010606 (1)
  • InterPro:IPR013083 (1)
  • InterPro:IPR017066 (1)
  • InterPro:IPR020683 (1)
  • InterPro:IPR036770 (1)
  • InterPro:IPR037252 (1)
    		•
  • PROSITE:PS01357 (1)
  • PROSITE:PS50088 (1)
  • PROSITE:PS50089 (1)
  • PROSITE:PS50135 (1)
  • PROSITE:PS50297 (1)
  • PROSITE:PS51416 (1)
    		•
  • Pfam:PF00569 (1)
  • Pfam:PF06701 (1)
  • Pfam:PF12796 (1)
    		•
  • EC:2.3.2.27 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA mib1-001 (1) 4673
    Select Tool
    mib1-004 (1) 3227
    Select Tool
    ncRNA mib1-005 (1) 1647
    Select Tool
    mRNA ottdart00000032677 (1) 698
    Select Tool
    ottdart00000062302 (1) 712
    Select Tool
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    SignaFish
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM mib1
    MARKER RELATIONSHIPS
    mib1Contained in: [BAC] DKEY-2P18 (1) (order this)
    [Fosmid] CH1073-221A23 (1) (order this)
    mib1Encodes: [EST] eu763 (1), fe47f05, IMAGE:7148100 (1) (order this)
    [cDNA] MGC:193576 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_173286 (1) 3293bp
    Select Tool
    Genomic GenBank:BX842700 (1) 198258bp
    Select Tool
    Polypeptide UniProtKB:B3DGQ0 (1) 1041aa
    Select Tool
    Sequence Clusters UniGene:106501 (1)
    Sequence Information (all 42)
    OTHER mib1 GENE PAGES
  • Alliance (1)
  • Gene:352910 (1)
  • VEGA:OTTDARG00000019100 (1)
  • Ensembl(GRCz11):ENSDARG00000102184 (1)
    • ORTHOLOGY for mib1 (Chr: 2)
    CITATIONS (247)