Gene

mib1

ID

ZDB-GENE-030404-2

Name

MIB E3 ubiquitin protein ligase 1

Symbol

mib1 Nomenclature History

Previous Names

mib
cg5841 (1)
chunp6889
fe47f05
im:7148100 (1)
KIAA1323 (1)
mind bomb
white tail (3)
wit (3)
wu:fe47f05 (1)

Type

protein_coding_gene

Location

Chr: 2 Mapping Details/Browsers

Description

Exhibits identical protein binding activity and ubiquitin-protein transferase activity. Involved in several processes, including animal organ development; nervous system development; and tube morphogenesis. Localizes to endocytic vesicle; perinuclear region of cytoplasm; and protein-containing complex. Is expressed in nervous system; neural tube; and pectoral fin. Used to study epilepsy. Human ortholog(s) of this gene implicated in left ventricular noncompaction. Orthologous to human MIB1 (mindbomb E3 ubiquitin protein ligase 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

12 figures from 11 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

IMAGE:7148100 (1 image)
eu763 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 131 figures from 79 publications
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With mib1 Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
		Left ventricular noncompaction 7	615092

Associated With mib1 Via Experimental Models

Human Disease	Fish	Conditions	Citations
epilepsy	mib1^{hi904Tg/hi904Tg}	standard conditions	Hortopan et al., 2010

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000433	Zinc finger, ZZ-type
Domain	IPR001841	Zinc finger, RING-type
Domain	IPR010606	Mib-herc2
Domain	IPR040847	Mind bomb, SH3 repeat domain
Domain	IPR042056	E3 ubiquitin-protein ligase MIB1/2, zinc finger, ZZ-type
Homologous_superfamily	IPR013083	Zinc finger, RING/FYVE/PHD-type
Homologous_superfamily	IPR036770	Ankyrin repeat-containing domain superfamily
Homologous_superfamily	IPR037252	Mib/herc2 domain superfamily
Homologous_superfamily	IPR043145	Zinc finger, ZZ-type superfamily
Repeat	IPR002110	Ankyrin repeat

Domain Details Per Protein

Protein	Length	Ankyrin repeat	Ankyrin repeat-containing domain superfamily	E3 ubiquitin-protein ligase MIB1/2, zinc finger, ZZ-type	Mib-herc2	Mib/herc2 domain superfamily	Mind bomb, SH3 repeat domain	Zinc finger, RING/FYVE/PHD-type	Zinc finger, RING-type	Zinc finger, ZZ-type	Zinc finger, ZZ-type superfamily
UniProtKB:B3DGQ0 InterPro	1041
UniProtKB:H9GYU5 InterPro	1041
UniProtKB:A0A0R4IHW3 InterPro	1038
UniProtKB:Q804S5 InterPro	1030
UniProtKB:A0A0R4IZE1 InterPro	233
UniProtKB:A0A140LFN2 InterPro	237

Transcripts

Genome Browsers

Type	Name	Length (nt)	Analysis
mRNA	mib1-201 (1) Ensembl	4673 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	mib1-202 (1) Ensembl	3227 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	mib1-205 (1) Ensembl	698 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	mib1-206 (1) Ensembl	712 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	mib1-005 (1) Ensembl	1647 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

SignaFish

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations