ZFIN ID: ZDB-GENE-030404-2
Gene Name: mindbomb E3 ubiquitin protein ligase 1
Gene Symbol: mib1
Sequence Ontology ID : SO:0000704

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Previous Names: mib, cg5841 (1), chunp6889, fe47f05, im:7148100 (1), KIAA1323 (1), mind bomb, white tail (3), wit (3), wu:fe47f05 (1)

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(Including Attributions)
Location: Chr: 2 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 11 figures from 9 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7148100]
  1 figure (1 image) from Thisse et al., 2005 [eu763]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
  brain, hindbrain, mesenchyme pectoral fin, neural tube (all 8) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi904Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • m132 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • m178 Point Mutation Unknown Premature Stop ENU
    mib1_unspecified Unspecified Unknown Unknown
    nn2000 Point Mutation Unknown Premature Stop ENU
    nn2001 Insertion Unknown Unknown ENU
    sa31118 Point Mutation Unknown Premature Stop ENU
    sa44378 Point Mutation Unknown Premature Stop ENU
    ta52b Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • tfi91 Point Mutation Unknown Premature Stop
    tfi101 Point Mutation Unknown Missense
    Targeting reagents: CRISPR1-mib1 (1), CRISPR2-mib1 (1), CRISPR3-mib1 (1), MO1-mib1 (1), MO2-mib1 (1) (all 7) expand
    PHENOTYPE
    Data: 112 figures from 65 publications
    Observed in: anatomical structure, anterior commissure astrocyte, anterior commissure commissural neuron axon guidance, anterior commissure (all 204) expand
    DISEASE ASSOCIATED WITH mib1 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Left ventricular noncompaction 7 615092
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein autoubiquitination (more)
    Cellular Component cytoplasm (more)
    Molecular Function protein homodimerization activity (more)
    GO Terms (all 84)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000433 (1)
  • InterPro:IPR001841 (1)
  • InterPro:IPR002110 (1)
  • InterPro:IPR010606 (1)
  • InterPro:IPR013083 (1)
  • InterPro:IPR017066 (1)
  • InterPro:IPR020683 (1)
  • InterPro:IPR036770 (1)
  • InterPro:IPR037252 (1)
  • PROSITE:PS01357 (1)
  • PROSITE:PS50088 (1)
  • PROSITE:PS50089 (1)
  • PROSITE:PS50135 (1)
  • PROSITE:PS50297 (1)
  • PROSITE:PS51416 (1)
  • Pfam:PF00569 (1)
  • Pfam:PF06701 (1)
  • Pfam:PF12796 (1)
  • EC:2.3.2.27 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA mib1-001 (1) 4673
    mib1-004 (1) 3227
    ncRNA mib1-005 (1) 1647
    mRNA ottdart00000032677 (1) 698
    ottdart00000062302 (1) 712
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    SignaFish
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM mib1
    Tg(col2a1a:mib_M1013R), tg(hsp70l-mib1:egfp)
    MARKER RELATIONSHIPS
    mib1Contained in: [BAC] DKEY-2P18 (1) (order this)
    [Fosmid] CH1073-221A23 (1) (order this)
    mib1Encodes: [EST] eu763 (1), fe47f05, IMAGE:7148100 (1) (order this)
    [cDNA] MGC:193576 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_173286 (1) 3293bp
    Genomic GenBank:BX842700 (1) 198258bp
    Select Tool
    Polypeptide UniProtKB:B3DGQ0 (1) 1041aa
    Sequence Clusters UniGene:106501 (1)
    Sequence Information (all 41)
    OTHER mib1 GENE PAGES
  • Alliance (1)
  • Gene:352910 (1)
  • VEGA:OTTDARG00000019100 (1)
  • Ensembl(GRCz10):ENSDARG00000102184 (1)
  • ORTHOLOGY for mib1 (Chr: 2)
    CITATIONS (233)