ZFIN ID: ZDB-GENE-030327-1
Gene Name: selenoprotein F
Gene Symbol: selenof    Nomenclature History

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Previous Names: sep15, cb29 (1), zgc:86882

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 2 Mapping Details/Browsers
Description: Predicted to have selenium binding activity. Predicted to localize to the endoplasmic reticulum lumen. Is expressed in several structures, including axis; mesoderm; otic placode; pectoral fin bud; and pectoral fin musculature. Orthologous to human SELENOF (selenoprotein F).
Genome Resources: Alliance (1),  Gene:352923 (1),  Ensembl(GRCz11):ENSDARG00000099664 (1)
GENE EXPRESSION
All Expression Data: 8 figures from 2 publications
Directly Submitted Expression Data: 6 figures (14 images) from Thisse et al., 2001 [cb29]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH selenof HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH selenof VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Cellular Component endoplasmic reticulum lumen (more)
Molecular Function selenium binding (more)
GO Terms (all 4)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Domain IPR014912 Selenoprotein F/M domain
Homologous_superfamily IPR036249 Thioredoxin-like superfamily
Homologous_superfamily IPR038219 Selenoprotein F/M superfamily
Family IPR039992 Selenoprotein F/M
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA selenof-201 (1)    Ensembl 956
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM selenof No data available
MARKER RELATIONSHIPS
selenof Contained in: [BAC] DKEY-43B14 (1) (order this)
selenof Encodes: [EST] cb29 (1) (order this)
[cDNA] MGC:86882 (1)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_178294 (1) 961 bp
Genomic GenBank:BX927330 (1) 203149 bp Blast at MegaBLAST
Polypeptide UniProtKB:Q802F3 (1) 153 aa
Sequence Information (all 18)
ORTHOLOGY for selenof ( Chr: 2 )
CITATIONS (22)