ZFIN ID: ZDB-GENE-030327-1
Gene Name: selenoprotein F
Gene Symbol: selenof
Sequence Ontology ID : SO:0000704

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Previous Names: sep15, cb29 (1), zgc:86882

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(Including Attributions)
Location: Chr: 2 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have selenium binding activity; predicted to localize to the endoplasmic reticulum lumen; orthologous to human SELENOF (selenoprotein F).
GENE EXPRESSION
All Expression Data: 8 figures from 2 publications
Directly Submitted Expression Data: 6 figures (14 images) from Thisse et al., 2001 [cb29]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH selenof HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH selenof VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Cellular Component endoplasmic reticulum lumen (more)
Molecular Function selenium binding (more)
GO Terms (all 3)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR014912 (1)
  • InterPro:IPR036249 (1)
  • InterPro:IPR038219 (1)
  • InterPro:IPR039992 (1)
  • Pfam:PF08806 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA selenof-201 (1) 956
    ncRNA sep15-002 (1) 787
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM selenof No data available
    MARKER RELATIONSHIPS
    selenofContained in: [BAC] DKEY-43B14 (1) (order this)
    selenofEncodes: [EST] cb29 (1) (order this)
    [cDNA] MGC:86882 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_178294 (1) 961bp
    Genomic GenBank:BX927330 (1) 203149bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q802F3 (1) 153aa
    Sequence Clusters UniGene:11333 (1)
    Sequence Information (all 19)
    OTHER selenof GENE PAGES
  • Alliance (1)
  • Gene:352923 (1)
  • VEGA:OTTDARG00000019637 (1)
  • Ensembl(GRCz11):ENSDARG00000099664 (1)
  • ORTHOLOGY for selenof (Chr: 2)
    CITATIONS (19)