ZFIN ID: ZDB-GENE-030131-9917
Gene Name: solute carrier family 39 member 1
Gene Symbol: slc39a1    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: cb629 (1), DrZIP1 (1), sb:cb629, zgc:111852 (1)

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 7 Mapping Details/Browsers
Description: Exhibits zinc ion binding activity. Involved in zinc ion transport. Localizes to plasma membrane. Is expressed in several structures, including eye; heart; neural crest; pleuroperitoneal region; and yolk syncytial layer. Orthologous to human SLC39A1 (solute carrier family 39 member 1) and SLC39A2 (solute carrier family 39 member 2).
Genome Resources: Alliance (1),  Gene:321324 (1),  Ensembl(GRCz11):ENSDARG00000058257 (1)
GENE EXPRESSION
All Expression Data: 9 figures from 4 publications
Directly Submitted Expression Data: 6 figures (13 images) from Thisse et al., 2001 [cb629]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa9435 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa34016 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH slc39a1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH slc39a1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process zinc ion transport (more)
    Cellular Component plasma membrane (more)
    Molecular Function zinc ion binding (more)
    GO Terms (all 11)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA slc39a1-201 (1)    Ensembl 1887
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM slc39a1 No data available
    MARKER RELATIONSHIPS
    slc39a1 Contained in: [BAC] DKEY-281A24 (1) (order this)
    slc39a1 Encodes: [EST] cb629 (1) (order this)
    [cDNA] MGC:111852 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_212583 (1) 1910 nt
    Genomic GenBank:BX571799 159106 nt
    Select Tool
    Polypeptide UniProtKB:B0S6Y6 (1) 302 aa
    Sequence Information (all 15)
    ORTHOLOGY for slc39a1 ( Chr: 7 )
    CITATIONS (30)