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ZIRC
ZFIN ID: ZDB-GENE-030131-9917
Gene Name: solute carrier family 39 member 1
Gene Symbol: slc39a1
Sequence Ontology ID : SO:0000704

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Previous Names: cb629 (1), DrZIP1 (1), sb:cb629, zgc:111852 (1)

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(Including Attributions)
Location: Chr: 7 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Exhibits zinc ion binding activity. Involved in zinc ion transport. Localizes to the plasma membrane. Orthologous to several human genes including SLC39A1 (solute carrier family 39 member 1).
GENE EXPRESSION
All Expression Data: 9 figures from 4 publications
Directly Submitted Expression Data: 6 figures (13 images) from Thisse et al., 2001 [cb629]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa9435 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa34016 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH slc39a1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH slc39a1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process zinc ion transport (more)
    Cellular Component plasma membrane (more)
    Molecular Function zinc ion binding (more)
    GO Terms (all 11)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003689 (1)
  • Pfam:PF02535 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA slc39a1-201 (1) 1887
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM slc39a1 No data available
    MARKER RELATIONSHIPS
    slc39a1Contained in: [BAC] DKEY-281A24 (1) (order this)
    slc39a1Encodes: [EST] cb629 (1) (order this)
    [cDNA] MGC:111852 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_212583 (1) 1910bp
    Genomic GenBank:BX571799 159106bp
    Select Tool
    Polypeptide UniProtKB:B0S6Y6 (1) 302aa
    Sequence Clusters UniGene:30340 (1)
    Sequence Information (all 16)
    ORTHOLOGY for slc39a1 (Chr: 7)
    CITATIONS (28)