ZFIN ID: ZDB-GENE-030131-9826
Gene Name: ATP-binding cassette, sub-family A (ABC1), member 1B
Gene Symbol: abca1b
Sequence Ontology ID : SO:0000704

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Previous Names: im:7136239, sb:cb407, wu:fa07e06, zgc:171581

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(Including Attributions)
Location: Chr: 14 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 15 figures from 4 publications
Directly Submitted Expression Data: 6 figures (11 images) from Thisse et al., 2001 [cb407]
  7 figures (7 images) from Thisse et al., 2004 [IMAGE:7136239]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Larval:Days 7-13 (168.0h-14d, 4.5mm, 8 teeth)
 
PHENOTYPE No data available
DISEASE ASSOCIATED WITH abca1b HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
familial hypercholesterolemia {Coronary artery disease in familial hypercholesterolemia, protection against} 143890
Tangier disease Tangier disease 205400
HDL deficiency, type 2 604091
DISEASE ASSOCIATED WITH abca1b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process transmembrane transport (more)
Cellular Component integral component of membrane (more)
Molecular Function ATPase activity (more)
GO Terms (all 9)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003439 (1)
  • InterPro:IPR003593 (1)
  • InterPro:IPR017871 (1)
  • InterPro:IPR026082 (1)
  • InterPro:IPR027417 (1)
  • PROSITE:PS00211 (1)
  • PROSITE:PS50893 (1)
  • Pfam:PF00005 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA abca1b-001 (1) 8271
    ottdart00000060118 (1) 1614
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM abca1b No data available
    MARKER RELATIONSHIPS
    abca1bContained in: [BAC] CH211-198I6 (1) (order this)
    abca1bEncodes: [EST] cb407 (1) (order this), fa07e06, IMAGE:7136239 (1) (order this)
    [cDNA] MGC:171581 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001114586 (1) 1617bp
    Genomic GenBank:CT009487 (1) 195244bp
    Select Tool
    Polypeptide UniProtKB:E7F2Y6 (1) 2282aa
    Sequence Clusters UniGene:27189 (1)
    Sequence Information (all 21)
    OTHER abca1b GENE PAGES
  • Alliance (1)
  • Gene:100136868 (1)
  • VEGA:OTTDARG00000034940 (1)
  • Ensembl(GRCz11):ENSDARG00000079009 (2)
  • ORTHOLOGY for abca1b (Chr: 14)
    CITATIONS (30)