ZFIN ID: ZDB-GENE-030131-9826
Gene Name: ATP-binding cassette, sub-family A (ABC1), member 1B
Gene Symbol: abca1b
Sequence Ontology ID : SO:0000704

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Previous Names: im:7136239, sb:cb407, wu:fa07e06, zgc:171581

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(Including Attributions)
Location: Chr: 14 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 14 figures from 3 publications
Directly Submitted Expression Data: 6 figures (11 images) from Thisse et al., 2001 [cb407]
  7 figures (7 images) from Thisse et al., 2004 [IMAGE:7136239]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Larval:Days 7-13 (168.0h-14d, 4.5mm, 8 teeth)
  floor plate, hypochord, mesoderm, notochord (all 10) expand
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la019103Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa8542 Point Mutation Unknown Splice Site ENU
    sa16400 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa18382 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa22420 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa22421 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa42341 Point Mutation Unknown Splice Site ENU
    sa42342 Point Mutation Unknown Premature Stop ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH abca1b HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    familial hypercholesterolemia {Coronary artery disease in familial hypercholesterolemia, protection against} 143890
    Tangier disease Tangier disease 205400
    HDL deficiency, type 2 604091
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process transport (more)
    Cellular Component integral component of membrane (more)
    Molecular Function ATP binding (more)
    GO Terms (all 10)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003439
  • InterPro:IPR003593
  • InterPro:IPR017871
  • InterPro:IPR026082
  • InterPro:IPR027417
  • PROSITE:PS00211
  • PROSITE:PS50893
  • Pfam:PF00005
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA abca1b-001 (1) 8271
    ottdart00000060118 (1) 1614
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM abca1b No data available
    MARKER RELATIONSHIPS
    abca1bContained in: [BAC] CH211-198I6 (1) (order this)
    abca1bEncodes: [EST] cb407 (1) (order this), fa07e06, IMAGE:7136239 (1) (order this)
    [cDNA] MGC:171581 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001114586 (1) 8390bp
    Genomic GenBank:CT009487 (1) 195244bp
    Select Tool
    Polypeptide UniProtKB:E7F2Y6 2282aa
    Sequence Clusters UniGene:27189 (1)
    Sequence Information (all 21)
    OTHER abca1b GENE PAGES
  • Gene:100136868 (1)
  • VEGA:OTTDARG00000034940 (1)
  • Ensembl(GRCz10):ENSDARG00000079009 (1)
  • ORTHOLOGY for abca1b (Chr: 14)
    CITATIONS (23)