ZFIN ID: ZDB-GENE-030131-9799
Gene Name: collagen, type IX, alpha 3
Gene Symbol: col9a3
Sequence Ontology ID : SO:0000704

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Previous Names: cb367 (1), sb:cb367 (1), si:ch73-162j3.1, wu:fa04f01

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(Including Attributions)
Location: Chr: 23 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (12 images) from Thisse et al., 2001 [cb367]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
PHENOTYPE No data available
DISEASE ASSOCIATED WITH col9a3 HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
multiple epiphyseal dysplasia Epiphyseal dysplasia, multiple, 3, with or without myopathy 600969
multiple epiphyseal dysplasia 3 Epiphyseal dysplasia, multiple, 3, with or without myopathy 600969
{Intervertebral disc disease, susceptibility to} 603932
DISEASE ASSOCIATED WITH col9a3 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Cellular Component collagen-containing extracellular matrix (more)
Molecular Function extracellular matrix structural constituent (more)
GO Terms (all 2)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003979 (1)
  • InterPro:IPR008160 (1)
  • Pfam:PF01391 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA col9a3-001 (1) 3113
    ncRNA col9a3-002 (1) 1788
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM col9a3 No data available
    MARKER RELATIONSHIPS
    col9a3Contained in: [BAC] DKEYP-44B8 (1)
    col9a3Contains: [SNP] rs3729220 (1), rs3729221 (1)
    col9a3Encodes: [EST] cb367 (1) (order this), fa04f01 (1), fc03f09
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001305573 (1)
    Genomic GenBank:BX323461 (1) 169310bp
    Select Tool
    Polypeptide UniProtKB:F1R1F1 (1) 679aa
    Sequence Clusters UniGene:34437 (1)
    Sequence Information (all 17)
    OTHER col9a3 GENE PAGES
  • Alliance (1)
  • Gene:567110 (1)
  • VEGA:OTTDARG00000030347 (1)
  • Ensembl(GRCz11):ENSDARG00000037845 (2)
  • ORTHOLOGY for col9a3 (Chr: 23)
    CITATIONS (17)