ZFIN ID: ZDB-GENE-030131-9799
Gene Name: collagen, type IX, alpha 3
Gene Symbol: col9a3
Previous Names: cb367 (1), sb:cb367 (1), si:ch73-162j3.1, wu:fa04f01
Location: Chr: 23   Details
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (12 images) from Thisse et al., 2001 [cb367]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Hatching:Long-pec (48.0h-60.0h)
  head mesenchyme, hypochord, mesenchyme derived from head mesoderm, mesoderm (all 8) expand
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS

Allele Type Mutagen Suppliers
sa13060 Point Mutation ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa13212 Point Mutation ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa16929 Point Mutation ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH col9a3 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Epiphyseal dysplasia, multiple, 3 600969
    {Intervertebral disc disease, susceptibility to} 603932
    Epiphyseal dysplasia, multiple, with myopathy
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component proteinaceous extracellular matrix (more)
    Molecular Function extracellular matrix structural constituent (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003979 (1)
  • InterPro:IPR008160 (1)
  • Pfam:PF01391 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA col9a3-001 (1) 3113
    ncRNA col9a3-002 (1) 1788
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM col9a3 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    col9a3 Contained in: [BAC] DKEYP-44B8 (1)
    col9a3 Contains: [SNP] rs3729220 (1), rs3729221 (1)
    col9a3 Encodes: [EST] cb367 (1) (order this), fa04f01 (1), fc03f09
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001305573 (1) 3113 bp
    Genomic GenBank:BX323461 (1) 169310 bp
    Select Tool
    Polypeptide UniProtKB:F1R1F1 (1) 679 aa
    Sequence Clusters UniGene:34437 (1)
    Sequence Information (all 18)
    OTHER col9a3 GENE PAGES
  • Gene:567110 (1)
  • VEGA:OTTDARG00000030347 (1)
  • Ensembl(Zv9):ENSDARG00000037845 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish col9a3 23  
    Human COL9A3 20 (20q13.3)
  • OMIM:120270
  • Gene:1299
  • Mouse Col9a3 2 ( 103.14 cM)
  • MGI:894686
  • Gene:12841
  • Orthology Details
    CITATIONS (13)