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General Information
ZIRC
ZFIN ID: ZDB-GENE-030131-9799
Gene Name: collagen, type IX, alpha 3
Gene Symbol: col9a3
Sequence Ontology ID : SO:0000704

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Previous Names: cb367 (1), sb:cb367 (1), si:ch73-162j3.1, wu:fa04f01

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(Including Attributions)
Location: Chr: 23 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to localize to the collagen type IX trimer; extracellular  ...
PHENOTYPE No data available
DISEASE ASSOCIATED WITH col9a3 HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
multiple epiphyseal dysplasia 3 Epiphyseal dysplasia, multiple, 3, with or without myopathy 600969
{Intervertebral disc disease, susceptibility to} 603932
DISEASE ASSOCIATED WITH col9a3 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process extracellular matrix organization (more)
Cellular Component collagen-containing extracellular matrix (more)
Molecular Function extracellular matrix structural constituent (more)
GO Terms (all 5)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003979 (1)
  • InterPro:IPR008160 (1)
  • Pfam:PF01391 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA col9a3-002 (1) 1788
    mRNA col9a3-201 (1) 3113
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM col9a3 No data available
    MARKER RELATIONSHIPS
    col9a3Contained in: [BAC] DKEYP-44B8 (1)
    col9a3Contains: [SNP] rs3729220 (1), rs3729221 (1)
    col9a3Encodes: [EST] cb367 (1) (order this), fa04f01 (1), fc03f09
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001305573 (1)
    Genomic GenBank:BX323461 (1) 169310bp
    Select Tool
    Polypeptide UniProtKB:F1R1F1 (1) 679aa
    Sequence Clusters UniGene:34437 (1)
    Sequence Information (all 17)
    ORTHOLOGY for col9a3 (Chr: 23)
    CITATIONS (18)