Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-030131-9799
Gene Name: collagen, type IX, alpha 3
Gene Symbol: col9a3
Previous Names: cb367 (1), sb:cb367 (1), si:ch73-162j3.1, wu:fa04f01
Location: Chr: 23   Details
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (12 images) from Thisse et al., 2001 [cb367]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Hatching:Long-pec (48.0h-60.0h)
  head mesenchyme, hypochord, mesenchyme derived from head mesoderm, mesoderm (all 8) expand
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS
Alleles: sa13060, sa13212, sa16929
PHENOTYPE
Phenotype of Human Orthologue OMIM Phenotype ID
Epiphyseal dysplasia, multiple, 3 600969
Epiphyseal dysplasia, multiple, with myopathy
{Intervertebral disc disease, susceptibility to} 603932
GENE ONTOLOGY
Ontology GO Term
Cellular Component proteinaceous extracellular matrix (more)
Molecular Function extracellular matrix structural constituent (more)
GO Terms (all 2)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003979 (1)
  • InterPro:IPR008160 (1)
  • Pfam:PF01391 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA col9a3-001 (1) 3113
    ncRNA col9a3-002 (1) 1788
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM col9a3 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    col9a3 Contained in: [BAC] DKEYP-44B8 (1)
    col9a3 Contains: [SNP] rs3729220 (1), rs3729221 (1)
    col9a3 Encodes: [EST] cb367 (1) (order this), fa04f01 (1), fc03f09
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_690399 (1) 3317 bp
    Genomic GenBank:BX323461 (1) 169310 bp
    Select Tool
    Polypeptide UniProtKB:F1R1F1 (1) 679 aa
    Sequence Clusters UniGene:34437 (1)
    Sequence Information (all 20)
    OTHER col9a3 GENE PAGES
  • Gene:567110 (1)
  • VEGA:OTTDARG00000030347 (1)
  • Ensembl(Zv9):ENSDARG00000037845 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish col9a3 23  
    Human COL9A3 20 (20q13.3)
  • OMIM:120270
  • Gene:1299
  • Mouse Col9a3 2 ( 103.14 cM)
  • MGI:894686
  • Gene:12841
  • Orthology Details
    CITATIONS (13)