ZFIN ID: ZDB-GENE-030131-9799
Gene Name: collagen, type IX, alpha 3
Gene Symbol: col9a3
Previous Names: cb367 (1), sb:cb367 (1), si:ch73-162j3.1, wu:fa04f01
Location: Chr: 23 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (12 images) from Thisse et al., 2001 [cb367]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Hatching:Long-pec (48.0h-60.0h)
  head mesenchyme, hypochord, mesenchyme derived from head mesoderm, mesoderm (all 8) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa13060 Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa13212 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa16929 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa37580 Point Mutation Unknown Unknown ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH col9a3 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    multiple epiphyseal dysplasia Epiphyseal dysplasia, multiple, 3 600969
    Epiphyseal dysplasia, multiple, with myopathy
    {Intervertebral disc disease, susceptibility to} 603932
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component proteinaceous extracellular matrix (more)
    Molecular Function extracellular matrix structural constituent (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003979 (1)
  • InterPro:IPR008160 (1)
  • Pfam:PF01391 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA col9a3-001 (1) 3113
    ncRNA col9a3-002 (1) 1788
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYSNo data available
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM col9a3 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    col9a3Contained in: [BAC] DKEYP-44B8 (1)
    col9a3Contains: [SNP] rs3729220 (1), rs3729221 (1)
    col9a3Encodes: [EST] cb367 (1) (order this), fa04f01 (1), fc03f09
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001305573 (1) 3113bp
    Genomic GenBank:BX323461 (1) 169310bp
    Select Tool
    Polypeptide UniProtKB:F1R1F1 (1) 679aa
    Sequence Clusters UniGene:34437 (1)
    Sequence Information (all 16)
    OTHER col9a3 GENE PAGES
  • Gene:567110 (1)
  • VEGA:OTTDARG00000030347 (1)
  • Ensembl(GRCz10):ENSDARG00000037845 (1)
  • ORTHOLOGY for col9a3 (Chr: 23)
    Species Symbol Chromosome Accession # Evidence
    Human COL9A3 20
  • Gene:1299
  • OMIM:120270
  • HGNC:2219
  • Amino acid sequence comparison (1)
    Conserved genome location (synteny) (1)
    Mouse Col9a3 2
  • MGI:894686
  • Gene:12841
  • Amino acid sequence comparison (1)
    Conserved genome location (synteny) (1)
    Download Curated Orthology
    CITATIONS (13)