ZFIN ID: ZDB-GENE-030131-9796
Gene Name: polypyrimidine tract binding protein 1b
Gene Symbol: ptbp1b    Nomenclature History

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Previous Names: cb363 (1), id:ibd2901, im:7145323, sb:cb363 (1), si:ch211-262i1.1, wu:fa04b05, wu:fb16f08, wu:fc58e03

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 11 Mapping Details/Browsers
Description: Predicted to have RNA binding activity. Predicted to be involved in mRNA processing. Predicted to localize to the nucleus. Is expressed in several structures, including EVL; axis; mesoderm; nervous system; and pronephric duct. Orthologous to human PTBP1 (polypyrimidine tract binding protein 1).
Genome Resources: Alliance (1),  Gene:321220 (1),  Ensembl(GRCz11):ENSDARG00000031907 (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa21870 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH ptbp1b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ptbp1b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process mRNA processing (more)
    Cellular Component nucleus (more)
    Molecular Function nucleic acid binding (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR000504 RNA recognition motif domain
    Family IPR006536 HnRNP-L/PTB
    Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    Domain IPR021790 PTBP1, RNA recognition motif 2-like
    Domain IPR034798 Polypyrimidine tract-binding protein1/2/3, RNA recognition motif 2
    Homologous_superfamily IPR035979 RNA-binding domain superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    aberrant processed transcript ptbp1b-205 (1)    Ensembl 824
    mRNA ptbp1b-201 (1)    Ensembl 3619
    ptbp1b-202 (1)    Ensembl 311
    ptbp1b-203 (1)    Ensembl 341
    ptbp1b-206 (1)    Ensembl 765
    ncRNA ptbp1b-004 (1)    Ensembl 801
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM ptbp1b No data available
    MARKER RELATIONSHIPS
    ptbp1b Contained in: [BAC] CH211-262I1 (1)
    ptbp1b Encodes: [EST] cb363 (1) (order this), fa04b05 (1), fb16f08, fb95g10 (1) (order this), fc58e03, fi15a04, ibd2901, IMAGE:7145323 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001122654 (1) 3762 bp
    Genomic GenBank:CR847939 (1) 181988 bp
    Select Tool
    Polypeptide UniProtKB:Q58EL3 (1) 586 aa
    Sequence Information (all 29)
    ORTHOLOGY for ptbp1b ( Chr: 11 )
    CITATIONS (23)