ZFIN ID: ZDB-GENE-030131-9786
Gene Name: procollagen, type IX, alpha 2
Gene Symbol: col9a2    Nomenclature History

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Previous Names: cb343 (1), sb:cb343, wu:fa12h02, wu:fc93e05, zgc:100808

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 19 Mapping Details/Browsers
Description: Predicted to have extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to localize to collagen type XI trimer and extracellular space. Is expressed in several structures, including axis; head; hypochord; nervous system; and pectoral fin. Human ortholog(s) of this gene implicated in Stickler syndrome; multiple epiphyseal dysplasia 2; and osteochondrodysplasia. Orthologous to human COL9A2 (collagen type IX alpha 2 chain).
Genome Resources: Alliance (1),  Gene:321212 (1),  Ensembl(GRCz11):ENSDARG00000024492 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la020811Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la020812Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa8661 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa9812 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH col9a2 HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    multiple epiphyseal dysplasia 2 Alliance Epiphyseal dysplasia, multiple, 2 600204
    ?Stickler syndrome, type V 614284
    DISEASE ASSOCIATED WITH col9a2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process extracellular matrix organization (more)
    Cellular Component collagen trimer (more)
    Molecular Function extracellular matrix structural constituent (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA col9a2-201 (1)    Ensembl 3163
    ncRNA col9a2-002 (1)    Ensembl 720
    col9a2-003 (1)    Ensembl 823
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM col9a2
    Construct Regulatory Regions Coding Sequences Species Tg Lines Publications
    Tg(col9a2:GFP-CAAX) col9a2 CAAXGFP Danio rerio 1 3
    Tg(col9a2:mCherry) col9a2 mCherry Danio rerio 1 2
    Tg(col9a2:QF2) col9a2 QF Danio rerio 1 1
    MARKER RELATIONSHIPS
    col9a2 Contained in: [BAC] CH211-194B5 (1)
    col9a2 Encodes: [EST] cb343 (1) (order this), fa12h02 (1), fc93e05 (1) (order this), IMAGE:7135988 (1)
    [cDNA] MGC:100808 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_212579 (1) 3178 nt
    Genomic GenBank:BX276085 (1) 202683 nt Blast at MegaBLAST
    Polypeptide UniProtKB:Q1LXU2 (1) 691 aa
    Sequence Information (all 18)
    ORTHOLOGY for col9a2 ( Chr: 19 )
    CITATIONS (42)