Gene
pabpc4
- ID
- ZDB-GENE-030131-9663
- Name
- poly(A) binding protein, cytoplasmic 4 (inducible form)
- Symbol
- pabpc4 Nomenclature History
- Previous Names
-
- cb12 (1)
- sb:cb12
- Type
- protein_coding_gene
- Location
- Chr: 17 Mapping Details/Browsers
- Description
- Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and poly(U) RNA binding activity. Predicted to be involved in regulation of macromolecule metabolic process and regulation of primary metabolic process. Predicted to be located in cytoplasm. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasmic stress granule; cytosol; and nucleus. Is expressed in eye; musculature system; solid lens vesicle; and somite. Orthologous to human PABPC4 (poly(A) binding protein cytoplasmic 4).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 17 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cb12 (5 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR002004 | Polyadenylate-binding protein/Hyperplastic disc protein, C-terminal |
| Domain | IPR003954 | RNA recognition motif domain, eukaryotes |
| Domain | IPR034364 | PABP, RNA recognition motif 1 |
| Domain | IPR045305 | PABP, RNA recognition motif 2 |
| Family | IPR006515 | Polyadenylate binding protein, human types 1, 2, 3, 4 |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
| Homologous_superfamily | IPR036053 | PABC (PABP) domain |
Domain Details Per Protein
| Protein | Additional Resources | Length | Nucleotide-binding alpha-beta plait domain superfamily | PABC (PABP) domain | PABP, RNA recognition motif 1 | PABP, RNA recognition motif 2 | Polyadenylate binding protein, human types 1, 2, 3, 4 | Polyadenylate-binding protein/Hyperplastic disc protein, C-terminal | RNA-binding domain superfamily | RNA recognition motif domain | RNA recognition motif domain, eukaryotes |
|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:Q7T3G5 | InterPro | 637 | |||||||||
| UniProtKB:A0A8M9PE33 | InterPro | 632 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
pabpc4-201
(1)
|
Ensembl | 2,204 nt | ||
| mRNA |
pabpc4-202
(1)
|
Ensembl | 4,220 nt |
Interactions and Pathways
No data available
Plasmids
No data available