ZFIN ID: ZDB-GENE-030131-9651
Gene Name: si:dkey-220f10.4
Gene Symbol: si:dkey-220f10.4    Nomenclature History

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Previous Names: cb105 (1), sb:cb105

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 12 Mapping Details/Browsers
Description: Predicted to be involved in protein localization to cilium. Predicted to localize to the cilium. Is expressed in epiphysis; retina; and retinal photoreceptor layer. Orthologous to human TULP2 (TUB like protein 2).
Genome Resources: Alliance (1),  Gene:564717 (1),  Ensembl(GRCz11):ENSDARG00000062902 (2)

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION
Directly Submitted Expression Data: 4 figures (9 images) from Thisse et al., 2001 [cb105]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa1568 Point Mutation Unknown Premature Stop ENU
sa14354 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa35277 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa35278 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH si:dkey-220f10.4 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH si:dkey-220f10.4 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein localization to cilium (more)
    Cellular Component cilium (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR000007 Tubby, C-terminal
    Domain IPR005398 Tubby, N-terminal
    Conserved_site IPR018066 Tubby, C-terminal, conserved site
    Homologous_superfamily IPR025659 Tubby-like, C-terminal
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA si:dkey-220f10.4-201 (1)    Ensembl 1771
    ncRNA si:dkey-220f10.4-002 (1)    Ensembl 684
    si:dkey-220f10.4-003 (1)    Ensembl 532
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM si:dkey-220f10.4 No data available
    MARKER RELATIONSHIPS
    si:dkey-220f10.4 Contained in: [BAC] DKEY-220F10 (1) (order this)
    si:dkey-220f10.4 Encodes: [EST] cb105 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_005160370 (1) 2232 bp
    Genomic GenBank:CR926135 (1) 73888 bp
    Select Tool
    Polypeptide UniProtKB:Q1L8C0 (1) 556 aa
    Sequence Information (all 14)
    ORTHOLOGY for si:dkey-220f10.4 ( Chr: 12 )
    CITATIONS (14)